Variant report

Variant	rs59698969
Chromosome Location	chr15:31728841-31728842
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:31616708..31620581-chr15:31726270..31733622,8	MCF-7	breast:
2	chr15:31727509..31730318-chr15:31731392..31734401,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169926	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs57222165	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57427482	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59348350	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74010609	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv932896	chr15:31292475-31730445	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
4	esv34100	chr15:31496514-31792591	Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	nsv903840	chr15:31589970-31800149	Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	nsv1051589	chr15:31728004-31972706	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv542320	chr15:31728004-31972706	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31712800-31732800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:31725400-31729000	Enhancers	Lung	lung
3	chr15:31726000-31731200	Enhancers	Spleen	Spleen
4	chr15:31726600-31729000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
5	chr15:31727600-31731000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
6	chr15:31727600-31732800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr15:31727800-31729200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr15:31727800-31729200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr15:31727800-31731000	Enhancers	Primary hematopoietic stem cells	blood
10	chr15:31727800-31732000	Enhancers	Primary B cells from peripheral blood	blood
11	chr15:31727800-31732600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr15:31727800-31732600	Weak transcription	Pancreas	Pancrea
13	chr15:31727800-31732600	Weak transcription	Right Atrium	heart
14	chr15:31727800-31732800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr15:31727800-31732800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr15:31727800-31732800	Weak transcription	Fetal Intestine Large	intestine
17	chr15:31728000-31729200	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr15:31728000-31730600	Enhancers	Thymus	Thymus
19	chr15:31728000-31731000	Enhancers	Fetal Thymus	thymus
20	chr15:31728000-31731800	Weak transcription	Colonic Mucosa	Colon
21	chr15:31728000-31731800	Weak transcription	Placenta	Placenta
22	chr15:31728000-31732600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr15:31728000-31732600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr15:31728000-31732600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr15:31728000-31732600	Weak transcription	Brain Cingulate Gyrus	brain
26	chr15:31728000-31732600	Weak transcription	Brain Hippocampus Middle	brain
27	chr15:31728000-31732600	Weak transcription	Fetal Intestine Small	intestine
28	chr15:31728000-31732800	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr15:31728000-31732800	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr15:31728200-31729000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
31	chr15:31728200-31729000	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr15:31728200-31729800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
33	chr15:31728200-31730400	Enhancers	Rectal Mucosa Donor 31	rectum
34	chr15:31728200-31730600	Enhancers	Duodenum Mucosa	Duodenum
35	chr15:31728200-31730800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr15:31728200-31731000	Enhancers	Primary B cells from cord blood	blood
37	chr15:31728200-31731000	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr15:31728200-31731000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr15:31728200-31731600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr15:31728200-31731800	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr15:31728200-31732600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr15:31728200-31732600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr15:31728200-31732600	Enhancers	Primary T cells fromperipheralblood	blood
44	chr15:31728200-31732600	Enhancers	Primary T helper cells fromperipheralblood	blood
45	chr15:31728200-31732600	Weak transcription	Brain Angular Gyrus	brain
46	chr15:31728200-31732600	Weak transcription	Fetal Brain Male	brain
47	chr15:31728200-31732600	Weak transcription	Fetal Heart	heart
48	chr15:31728200-31732600	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr15:31728200-31732600	Weak transcription	NH-A	brain
50	chr15:31728200-31732600	Weak transcription	NHLF	lung

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