Variant report

Variant	rs59702673
Chromosome Location	chr17:38381740-38381741
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:38374106..38377261-chr17:38378307..38382923,6	K562	blood:
2	chr17:38381357..38383850-chr17:38384561..38387081,2	K562	blood:
3	chr17:38375978..38377735-chr17:38381069..38383183,2	MCF-7	breast:
4	chr17:38379896..38382946-chr17:38398979..38400850,3	K562	blood:
5	chr17:38380892..38383406-chr17:38443847..38446516,2	K562	blood:
6	chr17:38373137..38377221-chr17:38377340..38382604,9	K562	blood:

Variant related genes	Relation type
ENSG00000171475	Chromatin interaction
ENSG00000094804	Chromatin interaction
ENSG00000200735	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10451257	1.00[EUR][1000 genomes]
rs56039264	1.00[EUR][1000 genomes]
rs56041121	1.00[EUR][1000 genomes]
rs73983038	1.00[EUR][1000 genomes]
rs73983040	1.00[EUR][1000 genomes]
rs9903261	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833444	chr17:38242823-38437280	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv525796	chr17:38306365-38405037	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38376600-38389200	Weak transcription	Esophagus	oesophagus
2	chr17:38376600-38389800	Weak transcription	Colonic Mucosa	Colon
3	chr17:38376600-38389800	Weak transcription	Ovary	ovary
4	chr17:38376600-38390400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr17:38376600-38392200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr17:38376600-38393200	Weak transcription	Fetal Heart	heart
7	chr17:38376600-38400400	Weak transcription	Psoas Muscle	Psoas
8	chr17:38376600-38412400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr17:38376600-38416800	Weak transcription	Aorta	Aorta
10	chr17:38376800-38381800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr17:38376800-38382800	Weak transcription	Fetal Intestine Large	intestine
12	chr17:38376800-38383000	Weak transcription	Fetal Intestine Small	intestine
13	chr17:38376800-38383000	Weak transcription	Thymus	Thymus
14	chr17:38376800-38383800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr17:38376800-38386800	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr17:38376800-38387200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr17:38376800-38388600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr17:38376800-38389200	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr17:38376800-38389200	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr17:38376800-38389200	Weak transcription	HUVEC	blood vessel
21	chr17:38376800-38389600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr17:38376800-38389600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr17:38376800-38390600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr17:38376800-38391400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr17:38376800-38391600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr17:38376800-38393600	Weak transcription	HMEC	breast
27	chr17:38377000-38383400	Weak transcription	Fetal Thymus	thymus
28	chr17:38377000-38418400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr17:38377200-38383400	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr17:38377200-38384600	Weak transcription	Primary B cells from cord blood	blood
31	chr17:38377200-38404800	Weak transcription	HSMMtube	muscle
32	chr17:38377400-38383200	Weak transcription	Fetal Muscle Trunk	muscle
33	chr17:38377400-38383200	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr17:38377400-38383600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr17:38377400-38388400	Weak transcription	Lung	lung
36	chr17:38377400-38389200	Weak transcription	Gastric	stomach
37	chr17:38377400-38408000	Weak transcription	Small Intestine	intestine
38	chr17:38377600-38383200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr17:38377600-38386600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr17:38377600-38388600	Weak transcription	GM12878-XiMat	blood
41	chr17:38377600-38389200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr17:38377600-38412800	Weak transcription	Primary hematopoietic stem cells	blood
43	chr17:38377800-38383400	Weak transcription	Liver	Liver
44	chr17:38377800-38384600	Weak transcription	HepG2	liver
45	chr17:38377800-38386400	Weak transcription	Spleen	Spleen
46	chr17:38377800-38389200	Weak transcription	A549	lung
47	chr17:38377800-38390000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr17:38377800-38390800	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr17:38377800-38400400	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr17:38378800-38383800	Weak transcription	Primary T cells fromperipheralblood	blood

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