Variant report

Variant	rs59729881
Chromosome Location	chr15:41829243-41829244
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:41829144-41829250	MCF-7	breast:	n/a	n/a
2	POLR2A	chr15:41829050-41829461	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:41823818..41827123-chr15:41828175..41831276,4	K562	blood:
2	chr15:41827251..41831779-chr15:41832424..41837409,12	K562	blood:
3	chr15:41814934..41817190-chr15:41828140..41829699,2	MCF-7	breast:
4	chr15:41784287..41786620-chr15:41827580..41829440,3	K562	blood:

Variant related genes	Relation type
RPAP1	TF binding region
ENSG00000137825	Chromatin interaction
ENSG00000103932	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs59910135	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74014604	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904112	chr15:41806658-41836234	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41806400-41835200	Weak transcription	Right Atrium	heart
2	chr15:41806600-41835200	Weak transcription	Fetal Heart	heart
3	chr15:41807200-41835600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr15:41808000-41829600	Strong transcription	Fetal Stomach	stomach
5	chr15:41808600-41829600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr15:41808600-41835400	Weak transcription	Fetal Brain Male	brain
7	chr15:41808800-41829600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr15:41809000-41829400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr15:41809000-41829400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr15:41809600-41829400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr15:41811600-41829600	Strong transcription	Fetal Intestine Large	intestine
12	chr15:41811600-41829800	Strong transcription	Fetal Muscle Leg	muscle
13	chr15:41811800-41829400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr15:41811800-41829400	Strong transcription	Brain Hippocampus Middle	brain
15	chr15:41811800-41829400	Strong transcription	Stomach Smooth Muscle	stomach
16	chr15:41811800-41829600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr15:41811800-41829600	Strong transcription	Brain Anterior Caudate	brain
18	chr15:41812000-41829600	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr15:41812200-41829600	Strong transcription	HUES6 Cell Line	embryonic stem cell
20	chr15:41812200-41829600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr15:41812400-41829400	Strong transcription	H1 Cell Line	embryonic stem cell
22	chr15:41812400-41829400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr15:41812400-41829400	Strong transcription	Liver	Liver
24	chr15:41812400-41829400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr15:41812400-41829400	Strong transcription	Fetal Intestine Small	intestine
26	chr15:41812400-41829400	Strong transcription	Left Ventricle	heart
27	chr15:41812400-41829600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr15:41812600-41829400	Strong transcription	Brain Germinal Matrix	brain
29	chr15:41812600-41829400	Strong transcription	Pancreas	Pancrea
30	chr15:41812600-41829600	Strong transcription	Sigmoid Colon	Sigmoid Colon
31	chr15:41813000-41829600	Strong transcription	Primary T cells from cord blood	blood
32	chr15:41814400-41829600	Strong transcription	Rectal Mucosa Donor 29	rectum
33	chr15:41815000-41829400	Strong transcription	Primary T helper cells PMA-I stimulated	--
34	chr15:41815800-41829400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr15:41816200-41829600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr15:41816400-41829600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
37	chr15:41816600-41829600	Strong transcription	HUES64 Cell Line	embryonic stem cell
38	chr15:41818200-41829400	Strong transcription	Brain Cingulate Gyrus	brain
39	chr15:41818200-41829400	Strong transcription	Duodenum Smooth Muscle	Duodenum
40	chr15:41818200-41829600	Strong transcription	HUES48 Cell Line	embryonic stem cell
41	chr15:41818200-41829600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
42	chr15:41818400-41829400	Strong transcription	Cortex derived primary cultured neurospheres	brain
43	chr15:41818400-41829400	Strong transcription	Ovary	ovary
44	chr15:41818400-41829400	Strong transcription	Osteobl	bone
45	chr15:41818400-41829600	Strong transcription	Thymus	Thymus
46	chr15:41818600-41829600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr15:41818800-41829400	Strong transcription	Colon Smooth Muscle	Colon
48	chr15:41821200-41829600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr15:41821200-41829600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr15:41821800-41835600	Weak transcription	Psoas Muscle	Psoas

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