Variant report

Variant	rs59740803
Chromosome Location	chr6:75824823-75824824
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10943236	0.98[ASN][1000 genomes]
rs12662022	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12662415	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12663939	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2015242	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2295252	0.82[AMR][1000 genomes]
rs2295253	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2300795	0.86[EUR][1000 genomes]
rs2300796	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3734191	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3765496	0.98[ASN][1000 genomes]
rs3818138	0.82[ASN][1000 genomes]
rs56091378	0.98[ASN][1000 genomes]
rs59737607	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61656115	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs619607	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs636444	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7758152	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9343271	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9343272	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9352192	1.00[AMR][1000 genomes]
rs9443154	0.98[ASN][1000 genomes]
rs9443156	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9447442	0.98[ASN][1000 genomes]
rs9447445	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022377	chr6:75762463-75919592	Genic enhancers Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv538309	chr6:75762463-75919592	Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv830697	chr6:75763095-75915029	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv1016804	chr6:75775846-76188585	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv538310	chr6:75775846-76188585	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
6	nsv463155	chr6:75789526-75980419	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases
7	nsv603762	chr6:75789526-75980419	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75808400-75826000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:75809600-75828200	Weak transcription	Hela-S3	cervix
3	chr6:75809600-75862000	Weak transcription	Fetal Kidney	kidney
4	chr6:75810000-75844400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr6:75812600-75835800	Weak transcription	HUVEC	blood vessel
6	chr6:75813000-75866200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:75813200-75840400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:75816400-75825000	Weak transcription	Ovary	ovary
9	chr6:75816400-75825400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr6:75816400-75828200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:75816600-75826200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr6:75817600-75862200	Strong transcription	HMEC	breast
13	chr6:75818400-75826200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:75818400-75826800	Weak transcription	Fetal Muscle Trunk	muscle
15	chr6:75818400-75828600	Weak transcription	Fetal Stomach	stomach
16	chr6:75818400-75831800	Weak transcription	Fetal Intestine Large	intestine
17	chr6:75818600-75827400	Weak transcription	Fetal Muscle Leg	muscle
18	chr6:75819200-75825200	Weak transcription	Adipose Nuclei	Adipose
19	chr6:75820800-75825200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr6:75822000-75825200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr6:75822000-75825200	Weak transcription	NHEK	skin
22	chr6:75822200-75825000	Weak transcription	HSMMtube	muscle
23	chr6:75822800-75831000	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr6:75823000-75825800	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr6:75823000-75839600	Strong transcription	HSMM	muscle
26	chr6:75823200-75825200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:75823400-75825200	Weak transcription	Aorta	Aorta
28	chr6:75823400-75844600	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr6:75823400-75862600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr6:75823600-75829600	Genic enhancers	Osteobl	bone
31	chr6:75824200-75825200	Enhancers	Liver	Liver
32	chr6:75824200-75825600	Genic enhancers	NHLF	lung
33	chr6:75824200-75825800	Enhancers	Rectal Smooth Muscle	rectum
34	chr6:75824400-75828600	Genic enhancers	NHDF-Ad	bronchial
35	chr6:75824600-75825000	Enhancers	Colon Smooth Muscle	Colon
36	chr6:75824600-75825200	Strong transcription	NH-A	brain
37	chr6:75824600-75825600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr6:75824600-75826800	Enhancers	Placenta Amnion	Placenta Amnion
39	chr6:75824600-75868200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr6:75824600-75879600	Weak transcription	Fetal Intestine Small	intestine
41	chr6:75824800-75825200	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr6:75824800-75825400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr6:75824800-75825400	Enhancers	HUES64 Cell Line	embryonic stem cell
44	chr6:75824800-75825400	Active TSS	Stomach Smooth Muscle	stomach
45	chr6:75824800-75839200	Weak transcription	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links