Variant report

Variant	rs59742893
Chromosome Location	chr19:56592751-56592752
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:56587880..56589665-chr19:56591150..56593865,2	MCF-7	breast:
2	chr19:56592253..56593839-chr19:56602016..56603722,2	K562	blood:
3	chr19:56581337..56584331-chr19:56590956..56592904,2	K562	blood:
4	chr19:56592228..56593017-chr19:56764764..56765328,2	K562	blood:
5	chr19:56165388..56167305-chr19:56590662..56593656,2	MCF-7	breast:
6	chr19:56587911..56589666-chr19:56592577..56594446,2	K562	blood:

Variant related genes	Relation type
ENSG00000063244	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73615721	1.00[AMR][1000 genomes]
rs73625371	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056598	chr19:56331762-56703428	Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
2	nsv1062406	chr19:56382492-56602374	Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1058988	chr19:56382492-56609032	Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv1064371	chr19:56418215-56842450	ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
5	nsv1057316	chr19:56418215-56849458	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
6	nsv580354	chr19:56505685-56723492	Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
7	nsv833883	chr19:56512601-56640089	Strong transcription Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
8	nsv523651	chr19:56537528-56707048	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
9	nsv1057820	chr19:56555942-56720262	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
10	nsv528998	chr19:56578238-56707048	Active TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
11	esv3382094	chr19:56590140-56593038	Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
12	esv3411256	chr19:56590590-56592938	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
13	nsv912512	chr19:56592286-56636759	Enhancers Genic enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
14	nsv517365	chr19:56592286-56674548	Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
15	nsv912513	chr19:56592286-56685463	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
16	nsv521744	chr19:56592286-56686953	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:56578200-56596800	Weak transcription	Gastric	stomach
2	chr19:56590800-56593600	Enhancers	Spleen	Spleen
3	chr19:56592000-56592800	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr19:56592000-56592800	Active TSS	H9 Cell Line	embryonic stem cell
5	chr19:56592000-56592800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr19:56592000-56592800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
7	chr19:56592000-56592800	Flanking Active TSS	Primary B cells from peripheral blood	blood
8	chr19:56592000-56592800	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
9	chr19:56592000-56592800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr19:56592000-56592800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr19:56592000-56592800	Flanking Active TSS	Adipose Nuclei	Adipose
12	chr19:56592000-56592800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
13	chr19:56592000-56592800	Enhancers	Placenta Amnion	Placenta Amnion
14	chr19:56592000-56592800	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
15	chr19:56592000-56592800	Active TSS	Thymus	Thymus
16	chr19:56592000-56592800	Flanking Active TSS	HepG2	liver
17	chr19:56592000-56593000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
18	chr19:56592000-56593000	Flanking Active TSS	Primary B cells from cord blood	blood
19	chr19:56592000-56593000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
20	chr19:56592000-56593000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr19:56592000-56593000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
22	chr19:56592200-56592800	Flanking Active TSS	H1 Cell Line	embryonic stem cell
23	chr19:56592200-56592800	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr19:56592200-56592800	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr19:56592200-56592800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
26	chr19:56592200-56592800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr19:56592200-56592800	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr19:56592200-56592800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr19:56592200-56592800	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
30	chr19:56592200-56592800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr19:56592200-56592800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr19:56592200-56592800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
33	chr19:56592200-56592800	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
34	chr19:56592200-56592800	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr19:56592200-56592800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
36	chr19:56592200-56592800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
37	chr19:56592200-56592800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
38	chr19:56592200-56592800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr19:56592200-56592800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr19:56592200-56592800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr19:56592200-56592800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr19:56592200-56592800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
43	chr19:56592200-56592800	Flanking Active TSS	Brain Angular Gyrus	brain
44	chr19:56592200-56592800	Flanking Active TSS	Brain Anterior Caudate	brain
45	chr19:56592200-56592800	Flanking Active TSS	Brain Cingulate Gyrus	brain
46	chr19:56592200-56592800	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
47	chr19:56592200-56592800	Flanking Active TSS	Brain Hippocampus Middle	brain
48	chr19:56592200-56592800	Flanking Bivalent TSS/Enh	Brain Inferior Temporal Lobe	brain
49	chr19:56592200-56592800	Flanking Active TSS	Brain Substantia Nigra	brain
50	chr19:56592200-56592800	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links