Variant report

Variant	rs59744820
Chromosome Location	chr1:57900778-57900779
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10493225	0.85[ASN][1000 genomes]
rs10889047	0.85[ASN][1000 genomes]
rs1155680	0.88[ASN][1000 genomes]
rs11584169	0.85[ASN][1000 genomes]
rs12044874	0.88[ASN][1000 genomes]
rs12044912	0.88[ASN][1000 genomes]
rs12046102	0.88[ASN][1000 genomes]
rs12121490	0.91[ASN][1000 genomes]
rs12132685	0.85[ASN][1000 genomes]
rs12752978	0.85[ASN][1000 genomes]
rs1334239	0.88[ASN][1000 genomes]
rs1334240	0.88[ASN][1000 genomes]
rs17459948	0.88[ASN][1000 genomes]
rs2781325	0.85[ASN][1000 genomes]
rs61770760	0.89[ASN][1000 genomes]
rs9436130	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817216	chr1:57801783-58130775	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1001771	chr1:57837089-58068175	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv870908	chr1:57884310-58037783	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57894800-57904600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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