Variant report

Variant	rs59747234
Chromosome Location	chr5:106858300-106858301
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:106794093..106796803-chr5:106857848..106860551,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1471041	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs149155	0.89[ASN][1000 genomes]
rs163614	0.89[ASN][1000 genomes]
rs163889	0.89[ASN][1000 genomes]
rs163890	0.89[ASN][1000 genomes]
rs39918	1.00[ASN][1000 genomes]
rs57889678	1.00[ASN][1000 genomes]
rs58772568	1.00[ASN][1000 genomes]
rs60575744	0.89[ASN][1000 genomes]
rs61200118	1.00[ASN][1000 genomes]
rs61415460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs849520	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034276	chr5:106461538-106944163	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv537851	chr5:106461538-106944163	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106842400-106880000	Weak transcription	Gastric	stomach
2	chr5:106848800-106865000	Weak transcription	Right Atrium	heart
3	chr5:106849000-106859200	Weak transcription	Esophagus	oesophagus
4	chr5:106849200-106859000	Weak transcription	Left Ventricle	heart
5	chr5:106850400-106859000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr5:106852000-106859000	Weak transcription	Pancreas	Pancrea
7	chr5:106852800-106860200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr5:106856000-106858600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr5:106856000-106858600	Weak transcription	Fetal Kidney	kidney
10	chr5:106856000-106858800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr5:106856000-106859000	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr5:106856000-106859000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr5:106856000-106859000	Weak transcription	HMEC	breast
14	chr5:106856000-106859000	Weak transcription	HSMM	muscle
15	chr5:106856000-106859200	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr5:106856000-106859800	Weak transcription	Stomach Mucosa	stomach
17	chr5:106856000-106865000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr5:106856000-106868600	Weak transcription	Right Ventricle	heart
19	chr5:106856200-106859000	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr5:106856200-106859000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr5:106856200-106859000	Weak transcription	NHEK	skin
22	chr5:106856400-106859000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr5:106856400-106865000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr5:106856600-106858400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr5:106856600-106859000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr5:106856600-106859000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr5:106856600-106865000	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr5:106856600-106865000	Weak transcription	Aorta	Aorta
29	chr5:106856800-106858400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr5:106856800-106858800	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr5:106856800-106859000	Weak transcription	Fetal Lung	lung
32	chr5:106856800-106859200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr5:106856800-106862000	Weak transcription	Fetal Heart	heart
34	chr5:106857400-106859600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr5:106857400-106868000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr5:106857600-106859000	Enhancers	A549	lung
37	chr5:106857600-106860600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr5:106857600-106861000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr5:106857800-106858400	Enhancers	HUES48 Cell Line	embryonic stem cell
40	chr5:106857800-106867200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr5:106858000-106858600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr5:106858000-106859000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr5:106858200-106858400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr5:106858200-106858400	Enhancers	Placenta Amnion	Placenta Amnion

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