Variant report

Variant	rs59747831
Chromosome Location	chr4:16124468-16124469
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:16124104..16125926-chr4:16130519..16132504,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10000737	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10000740	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11947876	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17418867	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28422061	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56119267	1.00[ASN][1000 genomes]
rs7666255	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7667214	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7696512	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7696910	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998299	chr4:16031459-16226466	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv1004821	chr4:16055996-16830629	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv537046	chr4:16055996-16830629	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:16118400-16125000	Weak transcription	Right Ventricle	heart
2	chr4:16119200-16125200	Weak transcription	Left Ventricle	heart
3	chr4:16121400-16124600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:16121400-16124800	Weak transcription	Fetal Heart	heart
5	chr4:16122800-16124600	Enhancers	Primary T cells from cord blood	blood
6	chr4:16122800-16125000	Weak transcription	Right Atrium	heart
7	chr4:16123000-16124800	Weak transcription	Fetal Muscle Trunk	muscle
8	chr4:16123000-16125600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr4:16123200-16124600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr4:16123200-16128200	Enhancers	Primary hematopoietic stem cells	blood
11	chr4:16123400-16125600	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr4:16123400-16125800	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr4:16123400-16127800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr4:16123600-16125000	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr4:16123600-16125600	Enhancers	Psoas Muscle	Psoas
16	chr4:16123600-16125800	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr4:16123600-16125800	Enhancers	Thymus	Thymus
18	chr4:16123600-16126000	Enhancers	Primary T cells fromperipheralblood	blood
19	chr4:16123600-16126000	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr4:16123800-16125000	Enhancers	Dnd41	blood
21	chr4:16123800-16125000	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr4:16123800-16125400	Enhancers	Primary B cells from cord blood	blood
23	chr4:16123800-16125600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr4:16123800-16125800	Enhancers	Primary B cells from peripheral blood	blood
25	chr4:16123800-16125800	Enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr4:16123800-16126000	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr4:16124000-16125200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr4:16124000-16128400	Enhancers	Fetal Muscle Leg	muscle
29	chr4:16124200-16124600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr4:16124200-16125400	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr4:16124200-16125400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
32	chr4:16124200-16125600	Enhancers	Fetal Thymus	thymus
33	chr4:16124200-16126000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
34	chr4:16124400-16125000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
35	chr4:16124400-16125000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
36	chr4:16124400-16125800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
37	chr4:16124400-16125800	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr4:16124400-16126200	Enhancers	Pancreas	Pancrea
39	chr4:16124400-16128600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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