Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:105928464..105929440-chr3:29212853..29213391,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11829036	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11830712	0.88[AFR][1000 genomes]
rs11835599	0.87[AFR][1000 genomes]
rs11836047	0.87[AFR][1000 genomes]
rs17037244	0.93[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs17037268	0.96[AFR][1000 genomes]
rs17037272	0.88[AFR][1000 genomes]
rs34575913	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57640915	0.95[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs58085209	0.87[AFR][1000 genomes]
rs58568935	0.98[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs58952628	0.87[AFR][1000 genomes]
rs59164069	0.87[AFR][1000 genomes]
rs59674166	0.88[AFR][1000 genomes]
rs60114853	0.91[AFR][1000 genomes]
rs60122617	0.90[AFR][1000 genomes]
rs60198882	0.98[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs61077860	0.87[AFR][1000 genomes]
rs61378511	0.87[AFR][1000 genomes]
rs61568061	0.96[AFR][1000 genomes]
rs72487522	0.93[AFR][1000 genomes]
rs7311732	0.88[AFR][1000 genomes]
rs7313359	0.93[AFR][1000 genomes]
rs7953865	0.91[AFR][1000 genomes]
rs7955110	0.88[AFR][1000 genomes]
rs7961339	0.84[AFR][1000 genomes]
rs7968885	0.89[AFR][1000 genomes]
rs7969008	0.90[AFR][1000 genomes]
rs872201	0.98[AFR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899501	chr12:105819046-105950801	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv832507	chr12:105821685-106005186	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105918200-105930800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr12:105927000-105929000	ZNF genes & repeats	HUVEC	blood vessel
3	chr12:105927800-105929200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr12:105928200-105929000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
5	chr12:105928600-105929000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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