Variant report

Variant	rs59769161
Chromosome Location	chr4:106547759-106547760
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106546192..106549061-chr4:106551188..106555603,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000236699	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs72669974	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106516000-106553000	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:106525400-106558600	Weak transcription	Fetal Intestine Large	intestine
3	chr4:106527200-106559000	Weak transcription	Fetal Intestine Small	intestine
4	chr4:106540600-106553800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr4:106542600-106551800	Weak transcription	HMEC	breast
6	chr4:106545200-106577800	Weak transcription	Pancreas	Pancrea
7	chr4:106545800-106548800	Weak transcription	Gastric	stomach
8	chr4:106545800-106552000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr4:106545800-106558600	Weak transcription	Left Ventricle	heart
10	chr4:106546000-106552400	Weak transcription	Brain Anterior Caudate	brain
11	chr4:106546000-106553800	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr4:106546000-106555800	Weak transcription	Fetal Lung	lung
13	chr4:106546000-106558200	Weak transcription	Brain Substantia Nigra	brain
14	chr4:106546200-106549400	Weak transcription	Stomach Mucosa	stomach
15	chr4:106546200-106551600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr4:106546200-106552000	Weak transcription	Brain Hippocampus Middle	brain
17	chr4:106546200-106554000	Weak transcription	Small Intestine	intestine
18	chr4:106546600-106548800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr4:106546800-106548600	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr4:106546800-106550600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr4:106546800-106551800	Weak transcription	Fetal Heart	heart
22	chr4:106547000-106548200	Weak transcription	GM12878-XiMat	blood
23	chr4:106547000-106553800	Weak transcription	Duodenum Mucosa	Duodenum

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