Variant report

Variant	rs59772922
Chromosome Location	chr15:79207466-79207467
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:79204974..79207838-chr15:79210921..79213668,2	K562	blood:
2	chr15:79200824..79204913-chr15:79206571..79210692,6	K562	blood:
3	chr15:79197450..79200031-chr15:79207203..79209165,2	MCF-7	breast:
4	chr15:79200824..79204209-chr15:79206571..79210953,6	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10851913	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10851914	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12592340	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12898532	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12899800	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12911969	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7171258	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7180375	0.82[ASN][1000 genomes]
rs734287	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7402286	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8042186	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8042638	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs892787	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9806693	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33573	chr15:79053484-79293881	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs59772922	CTSH	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79171200-79215600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr15:79171800-79207800	Strong transcription	Fetal Thymus	thymus
3	chr15:79172400-79216200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:79176800-79215200	Strong transcription	Dnd41	blood
5	chr15:79177000-79207800	Strong transcription	Primary T cells fromperipheralblood	blood
6	chr15:79178200-79219400	Strong transcription	Primary T helper cells fromperipheralblood	blood
7	chr15:79185600-79208600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr15:79187400-79213600	Weak transcription	Small Intestine	intestine
9	chr15:79188000-79209400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr15:79190000-79208200	Strong transcription	Primary T cells from cord blood	blood
11	chr15:79190000-79222200	Strong transcription	Thymus	Thymus
12	chr15:79190400-79208200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr15:79197200-79213600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr15:79199000-79213800	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr15:79199200-79207600	Strong transcription	Placenta	Placenta
16	chr15:79199600-79207800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr15:79199600-79218800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr15:79199800-79208000	Strong transcription	A549	lung
19	chr15:79199800-79229400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr15:79200400-79208200	Strong transcription	HUES6 Cell Line	embryonic stem cell
21	chr15:79200800-79208200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr15:79200800-79208200	Strong transcription	Sigmoid Colon	Sigmoid Colon
23	chr15:79200800-79208400	Strong transcription	Primary hematopoietic stem cells	blood
24	chr15:79200800-79208400	Strong transcription	Fetal Intestine Large	intestine
25	chr15:79201000-79208400	Strong transcription	Cortex derived primary cultured neurospheres	brain
26	chr15:79202200-79207800	Strong transcription	NHLF	lung
27	chr15:79202200-79209200	Weak transcription	Fetal Heart	heart
28	chr15:79202400-79213400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr15:79202600-79208200	Strong transcription	HUES64 Cell Line	embryonic stem cell
30	chr15:79202600-79211800	Weak transcription	Fetal Brain Male	brain
31	chr15:79202800-79213200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr15:79202800-79213800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr15:79203200-79207800	Weak transcription	Hela-S3	cervix
34	chr15:79203600-79231000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr15:79204200-79207600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr15:79204200-79211800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr15:79204800-79213600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr15:79204800-79219600	Strong transcription	Fetal Brain Female	brain
39	chr15:79205000-79208400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr15:79205000-79219000	Weak transcription	Fetal Kidney	kidney
41	chr15:79205200-79208800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr15:79205400-79208000	Genic enhancers	HSMMtube	muscle
43	chr15:79205400-79210800	Weak transcription	Fetal Lung	lung
44	chr15:79205400-79227800	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr15:79205600-79207600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr15:79205600-79207600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr15:79205600-79208200	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
48	chr15:79205600-79208200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr15:79205600-79208200	Genic enhancers	Colon Smooth Muscle	Colon
50	chr15:79205600-79208200	Genic enhancers	HSMM	muscle

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