Variant report

Variant	rs59776295
Chromosome Location	chr1:169137191-169137192
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:169132257..169133805-chr1:169136513..169138775,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12096706	1.00[AMR][1000 genomes]
rs16861864	1.00[AMR][1000 genomes]
rs57272385	0.84[AFR][1000 genomes]
rs57703397	0.92[AFR][1000 genomes]
rs58340481	0.91[AFR][1000 genomes]
rs58347696	0.92[AFR][1000 genomes]
rs59028370	0.92[AFR][1000 genomes]
rs59861850	0.92[AFR][1000 genomes]
rs60252569	0.92[AFR][1000 genomes]
rs60273087	0.92[AFR][1000 genomes]
rs60721108	0.92[AFR][1000 genomes]
rs60929546	0.92[AFR][1000 genomes]
rs73045871	1.00[AMR][1000 genomes]
rs73045883	1.00[AMR][1000 genomes]
rs73045884	1.00[AMR][1000 genomes]
rs73045886	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	esv3522071	chr1:168978325-169339044	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	esv3522072	chr1:168978325-169339044	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	nsv831858	chr1:169022383-169179068	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
5	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169091800-169137600	Weak transcription	Esophagus	oesophagus
2	chr1:169096600-169137400	Weak transcription	Fetal Stomach	stomach
3	chr1:169100800-169141400	Weak transcription	Fetal Muscle Leg	muscle
4	chr1:169104800-169142800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr1:169116400-169139400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr1:169121000-169140800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr1:169121200-169141200	Weak transcription	Left Ventricle	heart
8	chr1:169121800-169143000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr1:169124800-169138800	Weak transcription	Primary B cells from cord blood	blood
10	chr1:169127200-169137200	Weak transcription	Duodenum Mucosa	Duodenum
11	chr1:169130400-169195200	Weak transcription	Pancreas	Pancrea
12	chr1:169131000-169138800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr1:169131000-169139000	Weak transcription	Fetal Intestine Small	intestine
14	chr1:169131400-169139000	Weak transcription	Ovary	ovary
15	chr1:169131400-169149400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr1:169131600-169137600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr1:169132800-169139000	Weak transcription	Brain Hippocampus Middle	brain
18	chr1:169135600-169139800	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr1:169136400-169138600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr1:169137000-169137200	Enhancers	Psoas Muscle	Psoas
21	chr1:169137000-169137200	Enhancers	A549	lung
22	chr1:169137000-169137600	Strong transcription	Primary T cells from cord blood	blood
23	chr1:169137000-169138000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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