Variant report

Variant	rs59781518
Chromosome Location	chr7:50789409-50789410
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:50787237..50792773-chr7:50859512..50862102,5	K562	blood:
2	chr7:50785108..50787997-chr7:50788315..50791487,3	K562	blood:

Variant related genes	Relation type
ENSG00000106070	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10225052	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs10275663	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs2329493	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28758301	0.91[AMR][1000 genomes]
rs55677734	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6968670	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73349045	0.83[AMR][1000 genomes]
rs962507	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs9656698	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016665	chr7:50452552-51404524	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1031138	chr7:50651793-50814881	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50742600-50792000	Weak transcription	Primary T cells from cord blood	blood
2	chr7:50763400-50806800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr7:50772000-50791600	Weak transcription	K562	blood
4	chr7:50773000-50807400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:50777600-50792600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr7:50780600-50795000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr7:50780600-50807600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr7:50780800-50801400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr7:50781000-50794800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr7:50781200-50791200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr7:50781200-50795600	Weak transcription	NHDF-Ad	bronchial
12	chr7:50781200-50797600	Weak transcription	HSMMtube	muscle
13	chr7:50781200-50798200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr7:50783000-50792000	Weak transcription	HSMM	muscle
15	chr7:50783200-50791000	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr7:50783600-50790200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr7:50783800-50790600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr7:50783800-50798200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr7:50783800-50798400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr7:50784000-50789600	Weak transcription	Aorta	Aorta
21	chr7:50784000-50799400	Weak transcription	Hela-S3	cervix
22	chr7:50784600-50791000	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr7:50785400-50789600	Enhancers	Brain Anterior Caudate	brain
24	chr7:50785800-50790400	Enhancers	Fetal Lung	lung
25	chr7:50786000-50790400	Enhancers	HUVEC	blood vessel
26	chr7:50786200-50789800	Enhancers	Colon Smooth Muscle	Colon
27	chr7:50786600-50790600	Enhancers	Liver	Liver
28	chr7:50786800-50789600	Weak transcription	Primary hematopoietic stem cells	blood
29	chr7:50786800-50790600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr7:50786800-50795400	Weak transcription	Fetal Kidney	kidney
31	chr7:50787000-50789800	Weak transcription	Psoas Muscle	Psoas
32	chr7:50787000-50790000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr7:50787000-50792600	Weak transcription	Osteobl	bone
34	chr7:50787000-50797800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr7:50787000-50797800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr7:50787000-50798600	Weak transcription	Brain Germinal Matrix	brain
37	chr7:50787000-50807600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr7:50787400-50790000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr7:50787800-50790200	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr7:50787800-50794800	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr7:50787800-50798200	Weak transcription	HepG2	liver
42	chr7:50788000-50816000	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr7:50788200-50790200	Enhancers	Primary neutrophils fromperipheralblood	blood
44	chr7:50788200-50796200	Weak transcription	Small Intestine	intestine
45	chr7:50788400-50790200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr7:50788600-50789800	Enhancers	NH-A	brain
47	chr7:50788600-50790400	Enhancers	Rectal Smooth Muscle	rectum
48	chr7:50788800-50789600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr7:50788800-50790200	Enhancers	Gastric	stomach
50	chr7:50788800-50790400	Enhancers	Left Ventricle	heart

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