Variant report

Variant	rs59790083
Chromosome Location	chr17:19918630-19918631
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs55635616	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55693602	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56245939	0.85[EUR][1000 genomes]
rs58474255	0.87[AFR][1000 genomes]
rs61040459	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72841999	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72843505	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062853	chr17:19547912-20206601	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv907868	chr17:19768924-20217122	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv907869	chr17:19795774-19926836	Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv833394	chr17:19827714-19999577	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1060337	chr17:19828636-20204872	Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv543257	chr17:19828636-20204872	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
7	nsv907870	chr17:19871922-20001612	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:19913800-19919400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr17:19913800-19921200	Weak transcription	Aorta	Aorta
3	chr17:19914200-19925000	Weak transcription	Adipose Nuclei	Adipose
4	chr17:19914600-19920000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr17:19914600-19920400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr17:19914600-19920600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr17:19914600-19920800	Weak transcription	Brain Anterior Caudate	brain
8	chr17:19914600-19922000	Weak transcription	Brain Angular Gyrus	brain
9	chr17:19914600-19928000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr17:19914600-19938400	Weak transcription	Brain Hippocampus Middle	brain
11	chr17:19918000-19920200	Weak transcription	A549	lung
12	chr17:19918000-19922000	Weak transcription	K562	blood
13	chr17:19918600-19918800	Enhancers	Ovary	ovary

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