Variant report

Variant	rs59792862
Chromosome Location	chr6:166807419-166807420
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs58106573	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61532162	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73265117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73265156	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73265169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73265188	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73265191	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73267251	0.83[AFR][1000 genomes]
rs73267291	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv523548	chr6:166796433-166819774	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166797600-166808200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr6:166797600-166835800	Weak transcription	Right Atrium	heart
3	chr6:166798000-166812200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:166802400-166822400	Weak transcription	Gastric	stomach
5	chr6:166804200-166822200	Weak transcription	Brain Angular Gyrus	brain
6	chr6:166804800-166812200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:166805800-166812800	Enhancers	HepG2	liver
8	chr6:166807000-166807600	Enhancers	Liver	Liver
9	chr6:166807400-166809600	Bivalent Enhancer	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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