Variant report

Variant	rs59793163
Chromosome Location	chr4:8526935-8526936
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:8514998..8517976-chr4:8524546..8527313,2	MCF-7	breast:
2	chr4:8500815..8505571-chr4:8524859..8530536,4	MCF-7	breast:
3	chr4:8525437..8527279-chr4:8549040..8551142,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs6821991	1.00[AMR][1000 genomes]
rs6857481	1.00[AMR][1000 genomes]
rs73078209	1.00[AMR][1000 genomes]
rs73078210	1.00[AMR][1000 genomes]
rs73078211	1.00[AMR][1000 genomes]
rs73078213	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878604	chr4:8315938-8618916	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1002680	chr4:8357163-8721214	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv4224	chr4:8503727-8546462	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv878611	chr4:8512889-8534283	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:8523600-8529400	Enhancers	Placenta	Placenta
2	chr4:8525000-8528600	Enhancers	NHDF-Ad	bronchial
3	chr4:8525600-8528400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr4:8525800-8528400	Enhancers	Adipose Nuclei	Adipose
5	chr4:8525800-8528400	Enhancers	NHLF	lung
6	chr4:8526200-8528200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr4:8526400-8527000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr4:8526400-8527000	Enhancers	Spleen	Spleen
9	chr4:8526400-8527200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
10	chr4:8526400-8528200	Enhancers	Ovary	ovary
11	chr4:8526600-8527600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
12	chr4:8526600-8528200	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
13	chr4:8526600-8528200	Enhancers	HSMMtube	muscle
14	chr4:8526600-8528200	Enhancers	Osteobl	bone
15	chr4:8526600-8528600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr4:8526600-8528600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr4:8526600-8528600	Enhancers	HSMM	muscle
18	chr4:8526800-8527000	Enhancers	Lung	lung
19	chr4:8526800-8527000	Enhancers	Pancreas	Pancrea
20	chr4:8526800-8527200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr4:8526800-8527200	Enhancers	Fetal Lung	lung
22	chr4:8526800-8527400	Enhancers	HepG2	liver
23	chr4:8526800-8527800	Enhancers	NH-A	brain
24	chr4:8526800-8528000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr4:8526800-8528000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr4:8526800-8528000	Bivalent Enhancer	Fetal Stomach	stomach
27	chr4:8526800-8528200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr4:8526800-8528400	Enhancers	Placenta Amnion	Placenta Amnion

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