Variant report

Variant	rs59794500
Chromosome Location	chr2:235186755-235186756
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13386122	1.00[EUR][1000 genomes]
rs1519189	1.00[EUR][1000 genomes]
rs58746434	1.00[EUR][1000 genomes]
rs59432605	1.00[EUR][1000 genomes]
rs6720207	1.00[EUR][1000 genomes]
rs878732	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013712	chr2:234558457-235495825	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv584713	chr2:235092011-235236611	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv834572	chr2:235146304-235333842	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1000127	chr2:235158803-235210293	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:235169400-235188400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:235177600-235187400	Weak transcription	Fetal Brain Male	brain
3	chr2:235181600-235187000	Weak transcription	Fetal Thymus	thymus
4	chr2:235181600-235187200	Weak transcription	Thymus	Thymus
5	chr2:235183400-235187000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr2:235183400-235187000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr2:235183600-235187000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr2:235184400-235187000	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr2:235184400-235187000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr2:235184400-235187600	Weak transcription	Right Atrium	heart
11	chr2:235184800-235187000	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr2:235185800-235187000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr2:235186200-235187200	Enhancers	Dnd41	blood
14	chr2:235186400-235188800	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr2:235186400-235189000	Enhancers	Primary T cells from cord blood	blood
16	chr2:235186400-235189600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr2:235186400-235190400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr2:235186600-235188800	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr2:235186600-235189600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
20	chr2:235186600-235189800	Enhancers	Primary T helper cells fromperipheralblood	blood

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