Variant report

Variant	rs59800972
Chromosome Location	chr19:42161545-42161546
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs59128505	1.00[AMR][1000 genomes]
rs61735249	1.00[AMR][1000 genomes]
rs73545108	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73545113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73545114	1.00[AMR][1000 genomes]
rs73545142	1.00[AMR][1000 genomes]
rs73560870	1.00[AMR][1000 genomes]
rs73562908	1.00[AMR][1000 genomes]
rs73562909	1.00[AMR][1000 genomes]
rs73562911	1.00[AMR][1000 genomes]
rs73562915	1.00[AMR][1000 genomes]
rs73562917	1.00[AMR][1000 genomes]
rs73562925	1.00[AMR][1000 genomes]
rs73562945	1.00[AMR][1000 genomes]
rs73562961	1.00[AMR][1000 genomes]
rs73562962	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058847	chr19:42057334-42172442	Bivalent/Poised TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1063241	chr19:42057334-42175160	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv519408	chr19:42066279-42171906	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv3319146	chr19:42082639-42212929	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv3319147	chr19:42082742-42212770	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	esv3422975	chr19:42106166-42212774	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv522854	chr19:42120283-42931004	Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:42160400-42161800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr19:42160600-42161800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr19:42160600-42162000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
4	chr19:42160600-42162000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr19:42160800-42161600	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
6	chr19:42160800-42162000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
7	chr19:42161000-42161600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr19:42161000-42161800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr19:42161000-42162000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr19:42161000-42162000	Enhancers	Stomach Mucosa	stomach
11	chr19:42161200-42161600	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr19:42161200-42161800	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr19:42161200-42161800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links