Variant report

Variant	rs59809424
Chromosome Location	chr20:16214652-16214653
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1329825	0.81[ASN][1000 genomes]
rs1571545	0.91[ASN][1000 genomes]
rs16997384	0.94[ASN][1000 genomes]
rs16997388	0.92[ASN][1000 genomes]
rs16997391	0.90[ASN][1000 genomes]
rs2180444	0.81[ASN][1000 genomes]
rs2327986	0.85[ASN][1000 genomes]
rs2876423	0.84[ASN][1000 genomes]
rs4814459	0.94[ASN][1000 genomes]
rs4814460	0.94[ASN][1000 genomes]
rs6034418	0.94[ASN][1000 genomes]
rs6034424	0.82[ASN][1000 genomes]
rs6043822	0.89[ASN][1000 genomes]
rs6043823	0.89[ASN][1000 genomes]
rs6043824	0.89[ASN][1000 genomes]
rs6514666	0.94[ASN][1000 genomes]
rs8118036	0.94[ASN][1000 genomes]
rs9784173	0.90[ASN][1000 genomes]
rs9784178	0.90[ASN][1000 genomes]
rs9784181	0.90[ASN][1000 genomes]
rs9784187	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833930	chr20:16134347-16302763	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv178798	chr20:16205033-16214680	Weak transcription ZNF genes & repeats Enhancers Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16196200-16215600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr20:16209800-16215400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr20:16213000-16216600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr20:16214400-16216200	Weak transcription	Brain Germinal Matrix	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links