Variant report

Variant	rs59810491
Chromosome Location	chr9:117770127-117770128
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:117761424..117764207-chr9:117769713..117771502,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10118726	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60312520	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7033897	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831696	chr9:117701582-117874150	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv615250	chr9:117768021-118012841	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv916912	chr9:117770039-118014140	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117765200-117770800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr9:117765400-117771800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr9:117767800-117773000	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr9:117768000-117771400	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr9:117768400-117776000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr9:117768600-117771000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:117768600-117771600	Enhancers	NHDF-Ad	bronchial
8	chr9:117768600-117774400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr9:117769400-117770600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr9:117769400-117770600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr9:117769400-117770600	Weak transcription	NHEK	skin
12	chr9:117769400-117771200	Weak transcription	Fetal Lung	lung
13	chr9:117769600-117770600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr9:117769600-117770600	Weak transcription	HMEC	breast
15	chr9:117769600-117770600	Weak transcription	NH-A	brain
16	chr9:117769600-117770600	Weak transcription	NHLF	lung
17	chr9:117769600-117770800	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr9:117769800-117770200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr9:117769800-117775800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr9:117770000-117770400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr9:117770000-117770400	Weak transcription	Osteobl	bone
22	chr9:117770000-117772600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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