Variant report

Variant	rs5981761
Chromosome Location	chrX:74295645-74295646
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1340989	0.98[MKK][hapmap]
rs1340990	1.00[MKK][hapmap];1.00[YRI][hapmap]
rs1361702	0.98[MKK][hapmap]
rs1472396	1.00[ASW][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs1566126	0.98[MKK][hapmap]
rs2676492	0.98[MKK][hapmap]
rs4892392	0.98[MKK][hapmap]
rs5937962	0.98[MKK][hapmap]
rs5937966	0.95[YRI][hapmap]
rs5981325	0.98[MKK][hapmap]
rs5981784	0.98[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916758	chrX:73546406-74420929	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv531128	chrX:74232814-74416887	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:74265600-74296000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chrX:74265800-74316600	Weak transcription	Primary hematopoietic stem cells	blood
3	chrX:74266000-74303200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chrX:74266200-74304800	Weak transcription	GM12878-XiMat	blood
5	chrX:74266800-74296600	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chrX:74267200-74296200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chrX:74268000-74298000	Weak transcription	A549	lung
8	chrX:74268000-74302400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chrX:74270400-74317200	Weak transcription	Primary T cells fromperipheralblood	blood
10	chrX:74275800-74297600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chrX:74277400-74296400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chrX:74278600-74296000	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chrX:74280400-74295800	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chrX:74281200-74297000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chrX:74281800-74295800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chrX:74286600-74306600	Weak transcription	Small Intestine	intestine
17	chrX:74288800-74295800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chrX:74288800-74297200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chrX:74288800-74306400	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chrX:74289600-74295800	Weak transcription	Left Ventricle	heart
21	chrX:74289600-74296400	Weak transcription	Stomach Smooth Muscle	stomach
22	chrX:74289800-74299000	Weak transcription	Liver	Liver
23	chrX:74290000-74297400	Weak transcription	Hela-S3	cervix
24	chrX:74290400-74297000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chrX:74293800-74297400	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chrX:74294800-74298200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chrX:74295200-74297600	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chrX:74295200-74298600	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chrX:74295200-74300200	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chrX:74295200-74306800	Weak transcription	Dnd41	blood
31	chrX:74295200-74308000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chrX:74295200-74333800	Weak transcription	Fetal Intestine Large	intestine
33	chrX:74295400-74297000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chrX:74295400-74327200	Weak transcription	Duodenum Mucosa	Duodenum
35	chrX:74295400-74333000	Weak transcription	Primary B cells from peripheral blood	blood

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