Variant report

Variant	rs59820494
Chromosome Location	chr8:11330925-11330926
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:11322451..11325795-chr8:11329496..11335044,6	MCF-7	breast:
2	chr8:11323210..11326776-chr8:11330455..11332610,5	MCF-7	breast:
3	chr8:11328896..11331385-chr8:11333353..11335506,3	K562	blood:

Variant related genes	Relation type
ENSG00000154319	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11997701	1.00[EUR][1000 genomes]
rs11998211	1.00[EUR][1000 genomes]
rs17153171	1.00[EUR][1000 genomes]
rs17153311	1.00[AMR][1000 genomes]
rs17153437	1.00[EUR][1000 genomes]
rs17153457	1.00[EUR][1000 genomes]
rs2254959	1.00[EUR][1000 genomes]
rs2409783	1.00[EUR][1000 genomes]
rs28457086	1.00[AMR][1000 genomes]
rs28722994	1.00[AMR][1000 genomes]
rs34926793	1.00[EUR][1000 genomes]
rs56185487	1.00[EUR][1000 genomes]
rs56888159	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57586616	1.00[EUR][1000 genomes]
rs57741049	1.00[EUR][1000 genomes]
rs60536897	1.00[EUR][1000 genomes]
rs60798606	1.00[EUR][1000 genomes]
rs60866687	1.00[AMR][1000 genomes]
rs61104770	1.00[EUR][1000 genomes]
rs61372296	1.00[EUR][1000 genomes]
rs6984044	1.00[AMR][1000 genomes]
rs6994766	1.00[EUR][1000 genomes]
rs6997765	1.00[AMR][1000 genomes]
rs7012288	1.00[EUR][1000 genomes]
rs73530698	1.00[EUR][1000 genomes]
rs73533631	1.00[EUR][1000 genomes]
rs73533635	1.00[EUR][1000 genomes]
rs73533636	1.00[EUR][1000 genomes]
rs73533689	1.00[EUR][1000 genomes]
rs73535718	1.00[EUR][1000 genomes]
rs73535720	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73535722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73535733	1.00[EUR][1000 genomes]
rs73535736	1.00[EUR][1000 genomes]
rs73539735	1.00[EUR][1000 genomes]
rs73539737	1.00[EUR][1000 genomes]
rs73539765	1.00[EUR][1000 genomes]
rs73541732	1.00[EUR][1000 genomes]
rs73541774	1.00[EUR][1000 genomes]
rs73543849	1.00[EUR][1000 genomes]
rs73543868	1.00[EUR][1000 genomes]
rs73543893	1.00[EUR][1000 genomes]
rs73547808	1.00[EUR][1000 genomes]
rs73547893	1.00[EUR][1000 genomes]
rs73547901	1.00[EUR][1000 genomes]
rs73547902	1.00[EUR][1000 genomes]
rs73663108	1.00[EUR][1000 genomes]
rs7815435	1.00[EUR][1000 genomes]
rs7831922	1.00[EUR][1000 genomes]
rs7836533	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv529399	chr8:10970091-11805960	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	esv34097	chr8:11177372-11489894	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv1030756	chr8:11292073-11332782	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1022074	chr8:11292256-11394526	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv2762725	chr8:11322997-11350721	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:11325200-11331600	Weak transcription	Right Atrium	heart
2	chr8:11325200-11335000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:11325400-11331000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr8:11325600-11331000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr8:11325600-11331600	Weak transcription	Esophagus	oesophagus
6	chr8:11326000-11332000	Weak transcription	Fetal Thymus	thymus
7	chr8:11329000-11331800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr8:11329200-11331600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr8:11330200-11331000	Enhancers	Spleen	Spleen
10	chr8:11330200-11333600	Enhancers	Stomach Mucosa	stomach
11	chr8:11330400-11331000	Weak transcription	Fetal Brain Male	brain
12	chr8:11330400-11331200	Enhancers	Gastric	stomach
13	chr8:11330400-11331800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr8:11330400-11332600	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr8:11330400-11332800	Enhancers	Pancreas	Pancrea
16	chr8:11330600-11331000	Bivalent Enhancer	Placenta	Placenta
17	chr8:11330600-11331600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr8:11330600-11331800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr8:11330800-11331200	Transcr. at gene 5' and 3'	NHEK	skin
20	chr8:11330800-11331600	Enhancers	Muscle Satellite Cultured Cells	--
21	chr8:11330800-11331600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr8:11330800-11331800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr8:11330800-11331800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr8:11330800-11331800	Enhancers	Osteobl	bone
25	chr8:11330800-11332200	Weak transcription	Lung	lung

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