Variant report

Variant	rs59831429
Chromosome Location	chr16:72755575-72755576
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16971138	0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs55798436	0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs59374962	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7202635	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs72789392	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72789402	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs72791103	0.90[ASN][1000 genomes]
rs72793276	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs8047850	0.94[ASN][1000 genomes]
rs8050315	0.94[ASN][1000 genomes]
rs8059738	0.89[EUR][1000 genomes]
rs9934887	0.90[ASN][1000 genomes]
rs9939154	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060983	chr16:72074832-72791629	Genic enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
2	nsv1060804	chr16:72078486-72791629	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
3	nsv534039	chr16:72287171-72851170	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv1063049	chr16:72577004-72887111	Weak transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	nsv542952	chr16:72577004-72887111	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
6	esv1822094	chr16:72694760-72787961	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv572958	chr16:72696112-72778617	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:72746400-72760800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr16:72747800-72757600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr16:72749400-72756200	Weak transcription	Ovary	ovary
4	chr16:72750000-72755800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr16:72750400-72755600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr16:72750600-72757200	Weak transcription	Dnd41	blood
7	chr16:72750600-72763200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr16:72751800-72755600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr16:72754200-72759000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr16:72755400-72755600	Enhancers	Brain Cingulate Gyrus	brain
11	chr16:72755400-72756200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr16:72755400-72756200	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr16:72755400-72756200	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr16:72755400-72756200	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr16:72755400-72756400	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr16:72755400-72756400	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr16:72755400-72756800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr16:72755400-72757200	Enhancers	H1 Cell Line	embryonic stem cell
19	chr16:72755400-72757400	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr16:72755400-72757800	Enhancers	H9 Cell Line	embryonic stem cell

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