Variant report

Variant	rs5984149
Chromosome Location	chrX:91363047-91363048
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2760012	1.00[ASW][hapmap];0.83[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap]
rs5984153	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432350	chrX:91158935-91590765	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs5984149	PRAME	trans	lymphoblastoid	seeQTL

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:91360600-91373200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chrX:91361400-91363200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chrX:91362000-91363600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chrX:91362400-91363600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chrX:91362400-91364200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chrX:91362400-91365000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chrX:91362400-91373000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chrX:91362600-91363200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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