Variant report

Variant	rs59843895
Chromosome Location	chr6:161540465-161540466
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:161529332..161531304-chr6:161539010..161540660,2	K562	blood:
2	chr6:161529332..161532303-chr6:161538447..161540972,3	K562	blood:

Variant related genes	Relation type
ENSG00000085511	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10080650	0.87[AFR][1000 genomes]
rs9295136	0.81[AFR][1000 genomes]
rs9295139	0.86[AFR][1000 genomes]
rs9456623	1.00[AFR][1000 genomes]
rs9456629	1.00[AFR][1000 genomes]
rs9458106	0.81[AFR][1000 genomes]
rs9458128	1.00[AFR][1000 genomes]
rs9458142	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030045	chr6:161359075-161562255	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1023982	chr6:161382188-161549831	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv1030852	chr6:161477750-161589394	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161494400-161542400	Strong transcription	Duodenum Mucosa	Duodenum
2	chr6:161498000-161541800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr6:161500600-161541800	Strong transcription	K562	blood
4	chr6:161514000-161544600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:161514600-161541000	Strong transcription	Fetal Intestine Large	intestine
6	chr6:161517600-161543000	Strong transcription	Skeletal Muscle Female	skeletal muscle
7	chr6:161517800-161542200	Strong transcription	Liver	Liver
8	chr6:161518000-161540800	Strong transcription	Duodenum Smooth Muscle	Duodenum
9	chr6:161518000-161541400	Strong transcription	HUES6 Cell Line	embryonic stem cell
10	chr6:161522400-161542400	Strong transcription	Stomach Smooth Muscle	stomach
11	chr6:161523800-161540800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:161525800-161541200	Strong transcription	Cortex derived primary cultured neurospheres	brain
13	chr6:161526000-161541200	Strong transcription	Dnd41	blood
14	chr6:161526600-161540600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr6:161526600-161541400	Strong transcription	Placenta	Placenta
16	chr6:161526600-161542200	Strong transcription	Adipose Nuclei	Adipose
17	chr6:161527000-161540600	Strong transcription	HUES48 Cell Line	embryonic stem cell
18	chr6:161527000-161543000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:161527200-161542800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr6:161527400-161543600	Strong transcription	Fetal Lung	lung
21	chr6:161527600-161541400	Strong transcription	Brain Hippocampus Middle	brain
22	chr6:161527600-161547800	Weak transcription	Right Atrium	heart
23	chr6:161528600-161541000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr6:161528600-161541200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:161528600-161541200	Strong transcription	Osteobl	bone
26	chr6:161528600-161542000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr6:161528600-161544800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr6:161529600-161547600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr6:161532400-161541000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr6:161533200-161542800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr6:161533200-161543400	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr6:161533600-161542000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr6:161533600-161543200	Strong transcription	Primary T cells from cord blood	blood
34	chr6:161533800-161542800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr6:161534000-161549800	Weak transcription	Stomach Mucosa	stomach
36	chr6:161534600-161540600	Weak transcription	Fetal Brain Male	brain
37	chr6:161534600-161547200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr6:161534600-161555800	Weak transcription	A549	lung
39	chr6:161534600-161559800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr6:161536000-161543800	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chr6:161536200-161540800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr6:161536400-161541400	Strong transcription	H1 Cell Line	embryonic stem cell
43	chr6:161537000-161541400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr6:161537000-161546400	Weak transcription	NH-A	brain
45	chr6:161537200-161540600	Strong transcription	HUVEC	blood vessel
46	chr6:161537200-161541200	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr6:161537600-161556800	Weak transcription	Gastric	stomach
48	chr6:161537800-161541800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr6:161537800-161548200	Weak transcription	Small Intestine	intestine
50	chr6:161538200-161541200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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