Variant report

Variant	rs59845107
Chromosome Location	chr4:7987985-7987986
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr4:7987810-7988264	IMR90	lung:	n/a	n/a
2	SMC3	chr4:7987975-7988158	HepG2	liver:	n/a	n/a
3	POLR2A	chr4:7987985-7988146	HUVEC	blood vessel:	n/a	n/a
4	GATA2	chr4:7987825-7988304	HUVEC	blood vessel:	n/a	n/a
5	POLR2A	chr4:7987774-7988203	HUVEC	blood vessel:	n/a	n/a
6	REST	chr4:7987942-7988159	PFSK-1	brain:	n/a	n/a

Variant related genes	Relation type
ABLIM2	TF binding region

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16841528	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16841536	0.91[AMR][1000 genomes]
rs60854583	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491712	chr4:7582506-8155069	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv34140	chr4:7787936-8172491	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	esv2754386	chr4:7822449-7992909	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2756298	chr4:7822449-7992909	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv829851	chr4:7958698-8049060	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
6	nsv469779	chr4:7965253-8177646	Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
7	nsv482448	chr4:7965253-8177646	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
8	nsv878579	chr4:7969594-8011696	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7974400-7989400	Weak transcription	Gastric	stomach
2	chr4:7975800-7988400	Weak transcription	Aorta	Aorta
3	chr4:7975800-8004800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr4:7976000-7988000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr4:7978800-8006000	Weak transcription	Brain Anterior Caudate	brain
6	chr4:7979600-8011400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr4:7981000-7989400	Weak transcription	A549	lung
8	chr4:7981000-7992000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr4:7981600-7989400	Weak transcription	Esophagus	oesophagus
10	chr4:7983600-7988200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr4:7985400-8004800	Weak transcription	Brain Angular Gyrus	brain
12	chr4:7986000-7988000	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr4:7986000-7988200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr4:7986200-7988200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr4:7986400-7988000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr4:7986800-7988000	Weak transcription	Colonic Mucosa	Colon
17	chr4:7986800-7993600	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr4:7986800-8011400	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr4:7987000-7988200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr4:7987200-7988000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr4:7987200-7988000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
22	chr4:7987200-7988200	Flanking Active TSS	Duodenum Mucosa	Duodenum
23	chr4:7987400-7988000	Bivalent Enhancer	Fetal Stomach	stomach
24	chr4:7987400-7988000	Enhancers	Lung	lung
25	chr4:7987400-7988200	Enhancers	H1 Cell Line	embryonic stem cell
26	chr4:7987400-7988200	Enhancers	Fetal Heart	heart
27	chr4:7987400-7988200	Bivalent Enhancer	Placenta	Placenta
28	chr4:7987400-7988200	Flanking Bivalent TSS/Enh	HepG2	liver
29	chr4:7987400-7988200	Enhancers	NH-A	brain
30	chr4:7987400-7988400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr4:7987400-7988400	Enhancers	Small Intestine	intestine
32	chr4:7987400-7988600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
33	chr4:7987400-7988600	Enhancers	Fetal Intestine Small	intestine
34	chr4:7987400-7989000	Enhancers	Fetal Intestine Large	intestine
35	chr4:7987400-7990600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr4:7987600-7988000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr4:7987600-7988000	Enhancers	Primary T helper cells fromperipheralblood	blood
38	chr4:7987600-7988000	Enhancers	Muscle Satellite Cultured Cells	--
39	chr4:7987600-7988200	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr4:7987600-7988200	Enhancers	iPS-20b Cell Line	embryonic stem cell
41	chr4:7987600-7988200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr4:7987600-7988200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
43	chr4:7987600-7988200	Enhancers	Primary T helper cells PMA-I stimulated	--
44	chr4:7987600-7988200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
45	chr4:7987600-7988200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr4:7987600-7988200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr4:7987600-7988200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr4:7987600-7988200	Enhancers	Placenta Amnion	Placenta Amnion
49	chr4:7987600-7988200	Genic enhancers	Psoas Muscle	Psoas
50	chr4:7987600-7988200	Enhancers	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links