Variant report

Variant	rs59848490
Chromosome Location	chr7:47847865-47847866
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:47832164..47833007-chr7:47847350..47848005,2	MCF-7	breast:
2	chr7:47760936..47761875-chr7:47847263..47848045,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1453286	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17131834	1.00[AMR][1000 genomes]
rs4720617	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4720618	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57302548	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57408813	1.00[AMR][1000 genomes]
rs62448552	0.83[AFR][1000 genomes]
rs6463449	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6979042	1.00[AMR][1000 genomes]
rs73329487	1.00[AMR][1000 genomes]
rs73329500	1.00[AMR][1000 genomes]
rs73331721	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73331736	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73331746	1.00[AMR][1000 genomes]
rs73331750	1.00[AMR][1000 genomes]
rs73331759	1.00[AMR][1000 genomes]
rs73331766	1.00[AMR][1000 genomes]
rs73331768	1.00[AMR][1000 genomes]
rs73331771	1.00[AMR][1000 genomes]
rs73333609	1.00[AMR][1000 genomes]
rs73333660	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026223	chr7:47560728-48243287	Genic enhancers Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv888003	chr7:47694270-47907214	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv869585	chr7:47765428-48151324	Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:47823400-47849400	Weak transcription	Psoas Muscle	Psoas
2	chr7:47823400-47852200	Weak transcription	Right Ventricle	heart
3	chr7:47827000-47851400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr7:47838400-47853600	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr7:47842600-47852000	Weak transcription	Gastric	stomach
6	chr7:47844400-47848400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr7:47844600-47848000	Enhancers	Spleen	Spleen
8	chr7:47845000-47848200	Enhancers	Lung	lung
9	chr7:47845600-47848200	Enhancers	Placenta	Placenta
10	chr7:47845600-47852400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr7:47845800-47848000	Enhancers	Primary B cells from cord blood	blood
12	chr7:47845800-47848000	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr7:47846200-47848200	Enhancers	Primary B cells from peripheral blood	blood
14	chr7:47846600-47852800	Weak transcription	Fetal Intestine Small	intestine
15	chr7:47846800-47848200	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr7:47846800-47858600	Weak transcription	Rectal Smooth Muscle	rectum
17	chr7:47847000-47848200	Enhancers	Adipose Nuclei	Adipose
18	chr7:47847200-47851200	Weak transcription	Brain Anterior Caudate	brain
19	chr7:47847400-47848400	Enhancers	A549	lung
20	chr7:47847400-47849800	Weak transcription	Esophagus	oesophagus
21	chr7:47847400-47851200	Weak transcription	Fetal Stomach	stomach
22	chr7:47847400-47852200	Weak transcription	Left Ventricle	heart
23	chr7:47847400-47854000	Weak transcription	Fetal Muscle Leg	muscle
24	chr7:47847600-47848200	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr7:47847600-47848400	Strong transcription	HSMMtube	muscle
26	chr7:47847600-47851200	Weak transcription	Brain Angular Gyrus	brain
27	chr7:47847600-47851200	Weak transcription	Brain Cingulate Gyrus	brain
28	chr7:47847600-47855800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr7:47847600-47858800	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr7:47847800-47849000	Weak transcription	Fetal Thymus	thymus
31	chr7:47847800-47849000	Weak transcription	Pancreas	Pancrea
32	chr7:47847800-47849800	Weak transcription	HepG2	liver
33	chr7:47847800-47850200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr7:47847800-47851200	Weak transcription	Brain Hippocampus Middle	brain
35	chr7:47847800-47851200	Weak transcription	Brain Substantia Nigra	brain
36	chr7:47847800-47852200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr7:47847800-47853000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr7:47847800-47853000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr7:47847800-47854200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links