Variant report

Variant	rs59856095
Chromosome Location	chr14:31096966-31096967
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF384	chr14:31096955-31097139	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:31092884..31094625-chr14:31094770..31097263,2	MCF-7	breast:

Variant related genes	Relation type
SCFD1	TF binding region

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1113946	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11622786	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12882048	0.84[AMR][1000 genomes]
rs12882931	0.81[AMR][1000 genomes]
rs12888568	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs142983	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17096941	0.84[AMR][1000 genomes]
rs17097023	0.80[AMR][1000 genomes]
rs17097130	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2038451	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2273522	0.86[AMR][1000 genomes]
rs229164	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34935871	0.85[AMR][1000 genomes]
rs3736773	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3825740	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61976712	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs8009427	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8012325	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8013017	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564169	chr14:30819087-31541494	Strong transcription Genic enhancers ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1036419	chr14:30969616-31224226	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv901581	chr14:30978745-31585289	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv564171	chr14:31068090-31149630	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31092200-31100200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:31092200-31104000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr14:31092200-31121000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr14:31092200-31133200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:31092200-31133200	Weak transcription	Esophagus	oesophagus
6	chr14:31092400-31099600	Weak transcription	Placenta	Placenta
7	chr14:31092400-31099800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr14:31092400-31100200	Weak transcription	Fetal Muscle Trunk	muscle
9	chr14:31092400-31122800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr14:31092600-31100000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr14:31092800-31099600	Weak transcription	HSMM	muscle
12	chr14:31092800-31100000	Weak transcription	Stomach Smooth Muscle	stomach
13	chr14:31092800-31102000	Weak transcription	Psoas Muscle	Psoas
14	chr14:31092800-31113200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr14:31092800-31114200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr14:31093000-31098200	Weak transcription	A549	lung
17	chr14:31093200-31100000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr14:31093400-31098800	Weak transcription	Fetal Intestine Small	intestine
19	chr14:31093400-31100200	Weak transcription	Fetal Intestine Large	intestine
20	chr14:31093400-31103800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr14:31093400-31103800	Weak transcription	Brain Hippocampus Middle	brain
22	chr14:31093600-31097000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr14:31093600-31098400	Weak transcription	HMEC	breast
24	chr14:31093600-31099600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr14:31093600-31099600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr14:31093600-31099800	Weak transcription	Primary hematopoietic stem cells	blood
27	chr14:31093600-31100000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr14:31093600-31100200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr14:31093600-31100600	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr14:31093600-31101800	Weak transcription	HUVEC	blood vessel
31	chr14:31093600-31102000	Weak transcription	Fetal Kidney	kidney
32	chr14:31093600-31103800	Weak transcription	Brain Germinal Matrix	brain
33	chr14:31093600-31103800	Weak transcription	Fetal Lung	lung
34	chr14:31093600-31107200	Weak transcription	Right Ventricle	heart
35	chr14:31093600-31127200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr14:31093800-31098400	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr14:31093800-31099800	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr14:31093800-31100000	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr14:31093800-31113800	Weak transcription	Brain Substantia Nigra	brain
40	chr14:31093800-31159600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr14:31094000-31097600	Strong transcription	Primary B cells from cord blood	blood
42	chr14:31094000-31098000	Weak transcription	NHDF-Ad	bronchial
43	chr14:31094000-31098200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr14:31094000-31099600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr14:31094000-31099600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr14:31094000-31100000	Weak transcription	Brain Cingulate Gyrus	brain
47	chr14:31094000-31101600	Weak transcription	NH-A	brain
48	chr14:31094000-31101800	Weak transcription	Brain Angular Gyrus	brain
49	chr14:31094000-31111200	Weak transcription	HSMMtube	muscle
50	chr14:31094000-31113200	Weak transcription	Fetal Brain Male	brain

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