Variant report

Variant	rs59856654
Chromosome Location	chr4:76743680-76743681
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:76741166..76744063-chr4:76769113..76771616,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353539	chr4:76530136-76993859	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv529613	chr4:76654941-77081576	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	esv3467669	chr4:76741328-76746326	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv3467670	chr4:76741328-76746326	Enhancers Weak transcription Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv3521068	chr4:76742105-76744366	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	esv3521069	chr4:76742178-76744366	Enhancers Weak transcription Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	esv3521067	chr4:76742178-76745626	Enhancers Weak transcription Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	esv14694	chr4:76743255-76744325	Weak transcription Enhancers Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76736400-76744800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr4:76736600-76744600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr4:76736600-76763200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:76736800-76745000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr4:76736800-76745000	Weak transcription	Ovary	ovary
6	chr4:76736800-76745000	Weak transcription	K562	blood
7	chr4:76736800-76746400	Weak transcription	Brain Anterior Caudate	brain
8	chr4:76736800-76753000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr4:76737000-76745200	Weak transcription	Fetal Lung	lung
10	chr4:76737000-76753000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr4:76737200-76743800	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr4:76737400-76745000	Weak transcription	Fetal Intestine Small	intestine
13	chr4:76737600-76751000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr4:76738200-76745000	Weak transcription	HSMMtube	muscle
15	chr4:76738200-76745200	Weak transcription	Osteobl	bone
16	chr4:76738200-76748400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr4:76738200-76753000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr4:76738400-76744800	Weak transcription	NH-A	brain
19	chr4:76738400-76751800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr4:76738600-76743800	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr4:76738600-76744000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr4:76738800-76745000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr4:76741800-76743800	Enhancers	Pancreas	Pancrea
24	chr4:76742600-76745000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr4:76743200-76743800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr4:76743200-76744200	Enhancers	A549	lung
27	chr4:76743600-76743800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr4:76743600-76743800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr4:76743600-76743800	Enhancers	Colon Smooth Muscle	Colon
30	chr4:76743600-76743800	Enhancers	Gastric	stomach
31	chr4:76743600-76745000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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