Variant report

Variant	rs59857684
Chromosome Location	chr18:39212151-39212152
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9635938	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066869	chr18:38742896-39680723	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv543685	chr18:38742896-39680723	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv949609	chr18:39126941-40070286	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:39209800-39212200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr18:39210600-39212200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr18:39210600-39212200	Active TSS	iPS-20b Cell Line	embryonic stem cell
4	chr18:39211000-39212200	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr18:39211000-39212200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr18:39211000-39212200	Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr18:39211000-39212200	Active TSS	iPS-15b Cell Line	embryonic stem cell
8	chr18:39211400-39212200	Active TSS	H9 Cell Line	embryonic stem cell
9	chr18:39211400-39212200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr18:39211400-39212200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr18:39211400-39212200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
12	chr18:39211400-39212200	Active TSS	Fetal Stomach	stomach
13	chr18:39211400-39212600	Active TSS	HUES64 Cell Line	embryonic stem cell
14	chr18:39211600-39212200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr18:39211600-39212200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr18:39211600-39212200	Active TSS	HUES48 Cell Line	embryonic stem cell
17	chr18:39211800-39212200	Flanking Active TSS	H1 Cell Line	embryonic stem cell
18	chr18:39211800-39212200	Active TSS	Gastric	stomach
19	chr18:39212000-39212200	Active TSS	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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