Variant report

Variant	rs59857748
Chromosome Location	chr14:78673800-78673801
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10141650	0.83[ASN][1000 genomes]
rs12885580	0.82[ASN][1000 genomes]
rs17107117	1.00[ASN][1000 genomes]
rs4312244	1.00[ASN][1000 genomes]
rs57617792	0.98[ASN][1000 genomes]
rs57679658	1.00[ASN][1000 genomes]
rs59583601	0.98[ASN][1000 genomes]
rs60137667	0.89[ASN][1000 genomes]
rs60156450	1.00[ASN][1000 genomes]
rs60410935	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs60502805	0.98[ASN][1000 genomes]
rs60973131	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73322215	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1366	chr14:78633044-78677718	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78665000-78678000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr14:78669800-78675000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:78672400-78677600	Weak transcription	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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