Variant report

Variant	rs598650
Chromosome Location	chr11:120980537-120980538
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:120979543..120981996-chr11:121070890..121072492,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs4643089	0.85[CEU][hapmap];0.82[MEX][hapmap]
rs87466	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524	chr11:120963503-121008167	Weak transcription ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3424444	chr11:120976942-120981440	Enhancers Weak transcription Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3419516	chr11:120977042-120980940	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120958800-120980600	Weak transcription	Brain Germinal Matrix	brain
2	chr11:120971800-120983600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:120975800-121005600	Weak transcription	Right Ventricle	heart
4	chr11:120976400-120984200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:120976600-120982000	Weak transcription	Lung	lung
6	chr11:120976600-120982200	Weak transcription	Duodenum Mucosa	Duodenum
7	chr11:120976600-120982200	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr11:120976600-120983200	Weak transcription	Brain Substantia Nigra	brain
9	chr11:120976600-120992200	Weak transcription	Stomach Smooth Muscle	stomach
10	chr11:120976600-120998400	Weak transcription	Brain Anterior Caudate	brain
11	chr11:120976800-120980800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:120976800-120983600	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr11:120977600-120983600	Weak transcription	HSMMtube	muscle
14	chr11:120978200-120983000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr11:120979000-120981200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr11:120979200-120983600	Enhancers	Fetal Lung	lung
17	chr11:120979400-120981400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr11:120979800-120980600	Enhancers	Ovary	ovary
19	chr11:120980000-120980600	Enhancers	Fetal Muscle Leg	muscle
20	chr11:120980000-120983800	Enhancers	Fetal Brain Male	brain
21	chr11:120980000-120991000	Weak transcription	Aorta	Aorta
22	chr11:120980200-120980600	Enhancers	Fetal Brain Female	brain
23	chr11:120980400-120981200	Enhancers	Fetal Stomach	stomach

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