Variant report

Variant	rs59870594
Chromosome Location	chr1:213108388-213108389
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12563331	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57244386	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58826561	0.91[ASN][1000 genomes]
rs59579946	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61832433	1.00[AMR][1000 genomes]
rs6667192	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008383	chr1:213025546-213114894	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213102400-213115200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:213102800-213116000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr1:213103000-213110600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr1:213105200-213109800	Weak transcription	Fetal Intestine Large	intestine
5	chr1:213105200-213111400	Weak transcription	GM12878-XiMat	blood
6	chr1:213107800-213119400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr1:213108200-213111200	Enhancers	HepG2	liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links