Variant report

Variant	rs59871203
Chromosome Location	chr12:104599095-104599096
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11111931	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11111946	0.86[EUR][1000 genomes]
rs12296767	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12308914	0.86[EUR][1000 genomes]
rs12311576	0.86[EUR][1000 genomes]
rs12322184	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12322245	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17035297	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57554346	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61524019	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73392581	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73392582	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73392588	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73392593	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73394507	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73394524	0.84[EUR][1000 genomes]
rs73394536	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045725	chr12:104524153-104614108	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	n/a
2	nsv541586	chr12:104524153-104614108	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	n/a
3	esv1842062	chr12:104531180-104638773	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	n/a
4	nsv899493	chr12:104548613-104703228	Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv899494	chr12:104561521-104806232	Flanking Active TSS Weak transcription Genic enhancers Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104595600-104599600	Weak transcription	A549	lung
2	chr12:104598400-104599200	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr12:104598400-104599200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:104598400-104599200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr12:104598400-104599200	Enhancers	Ovary	ovary
6	chr12:104598800-104599200	Active TSS	Spleen	Spleen

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links