Variant report

Variant	rs59881302
Chromosome Location	chr15:42930419-42930420
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs58372549	1.00[EUR][1000 genomes]
rs60640857	1.00[EUR][1000 genomes]
rs61707019	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406601	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528725	chr15:42755555-43104406	Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42898000-42967800	Weak transcription	Fetal Intestine Small	intestine
2	chr15:42898400-42932800	Weak transcription	Esophagus	oesophagus
3	chr15:42903200-42931000	Weak transcription	Fetal Intestine Large	intestine
4	chr15:42908800-43015000	Weak transcription	Fetal Kidney	kidney
5	chr15:42909600-42966400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr15:42912800-42933200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr15:42915200-42940000	Weak transcription	HepG2	liver
8	chr15:42922000-42932200	Weak transcription	K562	blood
9	chr15:42922000-42932800	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr15:42923000-42958200	Weak transcription	Hela-S3	cervix
11	chr15:42924200-42931800	Weak transcription	HUVEC	blood vessel
12	chr15:42924400-42944600	Weak transcription	Thymus	Thymus
13	chr15:42925000-42934400	Strong transcription	Fetal Muscle Leg	muscle
14	chr15:42925000-42936000	Strong transcription	Fetal Stomach	stomach
15	chr15:42925200-42966000	Weak transcription	NH-A	brain
16	chr15:42925200-42966800	Weak transcription	NHLF	lung
17	chr15:42925400-42933400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr15:42925600-42933400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr15:42925600-42961000	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr15:42925800-42939200	Weak transcription	GM12878-XiMat	blood
21	chr15:42926400-42947200	Weak transcription	Fetal Brain Male	brain
22	chr15:42926600-42931000	Weak transcription	HSMMtube	muscle
23	chr15:42926800-42933400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr15:42926800-42939400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr15:42927600-42931600	Strong transcription	Left Ventricle	heart
26	chr15:42927800-42932000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr15:42927800-42932000	Strong transcription	Adipose Nuclei	Adipose
28	chr15:42927800-42932200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr15:42927800-42932400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr15:42927800-42932600	Strong transcription	Colon Smooth Muscle	Colon
31	chr15:42927800-42932600	Strong transcription	Ovary	ovary
32	chr15:42927800-42933400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr15:42927800-42934200	Strong transcription	Fetal Muscle Trunk	muscle
34	chr15:42928000-42935000	Strong transcription	Stomach Smooth Muscle	stomach
35	chr15:42928200-42973600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr15:42928200-42974000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr15:42928600-42934800	Weak transcription	Duodenum Mucosa	Duodenum
38	chr15:42928600-42938600	Weak transcription	Small Intestine	intestine
39	chr15:42928800-42932200	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr15:42928800-42933200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr15:42929000-42931400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr15:42929400-42931800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr15:42929400-42931800	Strong transcription	Lung	lung
44	chr15:42929400-42932400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr15:42929400-42932600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr15:42929400-42932800	Strong transcription	Cortex derived primary cultured neurospheres	brain
47	chr15:42929600-42930800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr15:42929600-42931200	Strong transcription	Placenta	Placenta
49	chr15:42929600-42931400	Strong transcription	Brain Cingulate Gyrus	brain
50	chr15:42929600-42931600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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