Variant report

Variant	rs59881423
Chromosome Location	chr15:77992064-77992065
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:30)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:30 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF274	chr15:77991850-77992079	GM12878	blood:	n/a	n/a
2	MYC	chr15:77991886-77992165	MCF-7	breast:	n/a	n/a
3	MAZ	chr15:77991755-77992212	Hela-S3	cervix:	n/a	n/a
4	SUZ12	chr15:77991580-77992275	H1-hESC	embryonic stem cell:	n/a	n/a
5	ESRRA	chr15:77991723-77992185	GM12878	blood:	n/a	n/a
6	CTCF	chr15:77991923-77992167	GM19239	blood:	n/a	n/a
7	MXI1	chr15:77991881-77992131	Hela-S3	cervix:	n/a	n/a
8	GTF2F1	chr15:77991746-77992197	Hela-S3	cervix:	n/a	n/a
9	RCOR1	chr15:77991697-77992146	K562	blood:	n/a	n/a
10	CTCF	chr15:77991940-77992090	AG04449	skin:	n/a	n/a
11	CTCF	chr15:77991940-77992090	GM12873	blood:	n/a	n/a
12	ZNF263	chr15:77991579-77992664	HEK293-T-REx	kidney:	n/a	chr15:77992297-77992306 chr15:77992112-77992133 chr15:77992546-77992555
13	ZNF143	chr15:77991737-77992218	Hela-S3	cervix:	n/a	n/a
14	IRF3	chr15:77991926-77992099	GM12878	blood:	n/a	n/a
15	RCOR1	chr15:77991811-77992270	Hela-S3	cervix:	n/a	n/a
16	CTCF	chr15:77991920-77992070	GM12865	blood:	n/a	n/a
17	CTCF	chr15:77991924-77992147	MCF-7	breast:	n/a	n/a
18	USF2	chr15:77991731-77992095	HepG2	liver:	n/a	n/a
19	MAFK	chr15:77991724-77992133	K562	blood:	n/a	n/a
20	NR2C2	chr15:77991562-77992263	GM12878	blood:	n/a	n/a
21	ZKSCAN1	chr15:77991744-77992166	Hela-S3	cervix:	n/a	n/a
22	RFX5	chr15:77991895-77992209	GM12878	blood:	n/a	n/a
23	ELK1	chr15:77991852-77992082	GM12878	blood:	n/a	n/a
24	CTCF	chr15:77991960-77992110	WERI-Rb-1	eye:	n/a	n/a
25	CTCF	chr15:77992000-77992150	GM12869	blood:	n/a	n/a
26	CHD2	chr15:77991748-77992099	GM12878	blood:	n/a	n/a
27	MYC	chr15:77991940-77992108	HUVEC	blood vessel:	n/a	n/a
28	BRCA1	chr15:77992014-77992206	GM12878	blood:	n/a	n/a
29	MYC	chr15:77991857-77992156	MCF-7	breast:	n/a	n/a
30	CTCF	chr15:77991940-77992090	GM12872	blood:	n/a	n/a

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:77986790..77988605-chr15:77991712..77993681,2	K562	blood:
2	chr15:77979748..77982431-chr15:77989857..77992919,3	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HMG20A-5	chr15:77992011-77992117	XLOC_011316

No data

Variant related genes	Relation type
LINGO1	TF binding region
ENSG00000169783	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv833060	chr15:77816654-78035204	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv1806097	chr15:77817889-78301377	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
6	nsv570141	chr15:77985554-78017361	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv1008836	chr15:77991528-77992131	ZNF genes & repeats Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv827402	chr15:77991528-77992131	Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv7618	chr15:77991614-77992141	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	esv3397637	chr15:77991627-77993290	Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	esv3347687	chr15:77991786-77992077	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	esv3358613	chr15:77991892-77992066	Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	esv3422804	chr15:77991939-77992610	ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77969200-78007600	Weak transcription	Right Atrium	heart
2	chr15:77991600-77992200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
3	chr15:77991600-77992200	ZNF genes & repeats	Brain Angular Gyrus	brain
4	chr15:77991600-77992200	ZNF genes & repeats	Fetal Brain Male	brain
5	chr15:77991800-77992200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr15:77991800-77992200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:77991800-77992200	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
8	chr15:77991800-77992200	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr15:77991800-77992200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr15:77991800-77992200	Bivalent/Poised TSS	Brain Anterior Caudate	brain
11	chr15:77991800-77992200	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr15:77991800-77992200	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
13	chr15:77991800-77992200	ZNF genes & repeats	Brain Substantia Nigra	brain
14	chr15:77991800-77992200	ZNF genes & repeats	Colon Smooth Muscle	Colon
15	chr15:77991800-77992200	ZNF genes & repeats	Esophagus	oesophagus
16	chr15:77991800-77992200	ZNF genes & repeats	Fetal Kidney	kidney
17	chr15:77991800-77992200	ZNF genes & repeats	Fetal Lung	lung
18	chr15:77991800-77992200	Bivalent Enhancer	Fetal Stomach	stomach
19	chr15:77991800-77992200	ZNF genes & repeats	Gastric	stomach
20	chr15:77991800-77992200	ZNF genes & repeats	Lung	lung
21	chr15:77991800-77992200	ZNF genes & repeats	Pancreas	Pancrea
22	chr15:77991800-77992200	Bivalent/Poised TSS	Skeletal Muscle Female	skeletal muscle
23	chr15:77991800-77992200	ZNF genes & repeats	Spleen	Spleen
24	chr15:77991800-77992200	Bivalent/Poised TSS	GM12878-XiMat	blood
25	chr15:77991800-77992200	ZNF genes & repeats	NHLF	lung
26	chr15:77992000-77992200	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
27	chr15:77992000-77992200	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr15:77992000-77992200	Flanking Bivalent TSS/Enh	Brain Cingulate Gyrus	brain
29	chr15:77992000-77992200	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
30	chr15:77992000-77992200	Bivalent Enhancer	Rectal Mucosa Donor 29	rectum
31	chr15:77992000-77992200	Bivalent/Poised TSS	Stomach Mucosa	stomach
32	chr15:77992000-77992200	Flanking Bivalent TSS/Enh	Hela-S3	cervix
33	chr15:77992000-77992200	Bivalent/Poised TSS	NHDF-Ad	bronchial

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