Variant report

Variant	rs59885527
Chromosome Location	chr3:115844156-115844157
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs13091700	0.91[AMR][1000 genomes]
rs16824437	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs57380686	0.91[AMR][1000 genomes]
rs6782437	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs72959770	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs72959771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72959783	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72959790	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012260	chr3:115680931-115935968	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2756413	chr3:115721898-115908480	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv2751975	chr3:115766285-115902901	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv2755046	chr3:115818840-115942952	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv591345	chr3:115819376-115902901	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2752728	chr3:115833212-115902901	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:115834800-115844200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr3:115837600-115847400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr3:115842200-115846000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr3:115843200-115844800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr3:115843400-115844600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr3:115843600-115848400	Weak transcription	Brain Hippocampus Middle	brain
7	chr3:115843800-115844200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
8	chr3:115843800-115844600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr3:115844000-115844400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
10	chr3:115844000-115844600	Enhancers	HUES64 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links