Variant report

Variant	rs59886058
Chromosome Location	chr6:85995894-85995895
allele	-/ACACAGCAG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXP2	chr6:85995674-85995933	PFSK-1	brain:	n/a	n/a
2	POLR2A	chr6:85995862-85995899	MCF-7	breast:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:85995874-85995924	ECC-1	luminal epithelium:	n/a
2	chr6:85995874-85995924	HCF	heart:	n/a
3	chr6:85995874-85995924	HEEpiC	esophagus:	n/a
4	chr6:85995874-85995924	PrEC	prostate:	n/a
5	chr6:85995874-85995924	HNPCEpiC	eye:	n/a
6	chr6:85995874-85995924	HEK293	kidney:	embryo
7	chr6:85995874-85995924	Jurkat	blood:	n/a
8	chr6:85995874-85995924	Hela-S3	cervix:	n/a
9	chr6:85995874-85995924	IMR90	lung:	fetal
10	chr6:85995874-85995924	ovcar-3	ovarian:	n/a
11	chr6:85995874-85995924	GM12891	blood:	n/a
12	chr6:85995874-85995924	AG09309	skin:	n/a
13	chr6:85995874-85995924	NHBE	bronchial:	n/a
14	chr6:85995874-85995924	GM12892	blood:	n/a
15	chr6:85995874-85995924	K562	blood:	n/a
16	chr6:85995874-85995924	AG04450	lung:	fetal
17	chr6:85995874-85995924	HIPEpiC	eye:	n/a
18	chr6:85995874-85995924	PANC-1	pancreas:	n/a
19	chr6:85995874-85995924	T-47D	breast:	n/a
20	chr6:85995874-85995924	HPAEpiC	pulmonary alveolar:	n/a
21	chr6:85995874-85995924	GM12878	blood:	n/a
22	chr6:85995874-85995924	U87	brain:	n/a
23	chr6:85995874-85995924	NH-A	brain:	n/a
24	chr6:85995874-85995924	GM19239	blood:	n/a
25	chr6:85995874-85995924	GM06990	blood:	n/a
26	chr6:85995874-85995924	MCF10A-Er-Src	breast:	n/a
27	chr6:85995874-85995924	LNCaP	prostate:	n/a
28	chr6:85995874-85995924	HUVEC	blood vessel:	n/a
29	chr6:85995874-85995924	HAEpiC	amniotic membrane:	n/a
30	chr6:85995874-85995924	SKMC	muscle:	n/a
31	chr6:85995874-85995924	HRE	kidney:	n/a
32	chr6:85995874-85995924	MCF-7	breast:	n/a
33	chr6:85995874-85995924	NB4	blood:	n/a
34	chr6:85995874-85995924	PFSK-1	brain:	n/a
35	chr6:85995874-85995924	RPTEC	kidney:	n/a
36	chr6:85995874-85995924	NT2-D1	testis:	n/a
37	chr6:85995874-85995924	AG04449	skin:	fetal
38	chr6:85995874-85995924	AG09319	gingival:	n/a
39	chr6:85995874-85995924	SK-N-SH_RA	brain:	n/a
40	chr6:85995874-85995924	NHDF-neo	bronchial:	n/a
41	chr6:85995874-85995924	BE2_C	brain:	n/a
42	chr6:85995874-85995924	AoSMC	blood vessel:	n/a
43	chr6:85995874-85995924	Caco-2	colon:	n/a
44	chr6:85995874-85995924	SK-N-MC	brain:	n/a
45	chr6:85995874-85995924	HCM	heart:	n/a
46	chr6:85995874-85995924	HCPEpiC	choroid plexus:	n/a
47	chr6:85995874-85995924	HL-60	blood:	n/a
48	chr6:85995874-85995924	BJ	skin:	n/a
49	chr6:85995874-85995924	SAEC	small airway:	n/a
50	chr6:85995874-85995924	SK-N-SH	brain:	n/a

No data

Variant related genes	Relation type
KRT18P64	TF binding region
KRT18P64	CpG island

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10498952	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11962094	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs313231	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs313232	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017418	chr6:85344786-86259540	Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv538347	chr6:85344786-86259540	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv1022445	chr6:85972678-86392968	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
4	nsv538349	chr6:85972678-86392968	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
5	nsv830721	chr6:85987644-86147414	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:85995600-85996000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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