Variant report

Variant	rs59898368
Chromosome Location	chr10:117884204-117884205
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17094241	0.83[AMR][1000 genomes]
rs59425128	0.83[AMR][1000 genomes]
rs73368483	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73370411	0.83[AMR][1000 genomes]
rs74160650	0.83[AMR][1000 genomes]
rs7901350	0.83[AMR][1000 genomes]
rs7901535	0.83[AMR][1000 genomes]
rs7904658	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428568	chr10:117806874-117972993	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3449389	chr10:117806874-118102404	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv34187	chr10:117857916-117894117	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117869000-117885200	Strong transcription	Fetal Stomach	stomach
2	chr10:117874600-117884800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:117875000-117885000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:117878800-117884600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:117880200-117885000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr10:117880400-117892200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr10:117881800-117886000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr10:117881800-117887600	Weak transcription	HSMMtube	muscle
9	chr10:117882400-117885000	Strong transcription	Fetal Muscle Leg	muscle
10	chr10:117882600-117885000	Strong transcription	Liver	Liver
11	chr10:117883200-117886000	Weak transcription	HSMM	muscle
12	chr10:117883800-117884800	Strong transcription	Fetal Muscle Trunk	muscle
13	chr10:117884000-117884800	Strong transcription	Stomach Smooth Muscle	stomach
14	chr10:117884200-117884600	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr10:117884200-117885200	Enhancers	H9 Cell Line	embryonic stem cell
16	chr10:117884200-117885200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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