Variant report

Variant	rs59902499
Chromosome Location	chr1:10661187-10661188
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:10660994..10662819-chr1:10672877..10674631,2	K562	blood:
2	chr1:10659595..10662178-chr1:10730395..10732793,2	MCF-7	breast:
3	chr1:10658219..10661192-chr1:10664484..10666047,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs58258505	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817370	chr1:10305470-10697150	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1008021	chr1:10363794-10802633	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:10589400-10664800	Weak transcription	Aorta	Aorta
2	chr1:10628400-10661600	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr1:10632600-10698000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr1:10638400-10661600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:10638600-10661600	Weak transcription	Primary B cells from peripheral blood	blood
6	chr1:10644200-10683400	Weak transcription	K562	blood
7	chr1:10650200-10670600	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr1:10651400-10672800	Weak transcription	Thymus	Thymus
9	chr1:10651600-10715800	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr1:10652400-10661400	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr1:10652400-10678400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr1:10653600-10688600	Weak transcription	Colon Smooth Muscle	Colon
13	chr1:10654800-10661400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr1:10654800-10666200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr1:10654800-10691600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr1:10655800-10672600	Weak transcription	Right Ventricle	heart
17	chr1:10655800-10677200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr1:10656200-10661400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr1:10656200-10675000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr1:10656400-10661600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr1:10656400-10675000	Weak transcription	GM12878-XiMat	blood
22	chr1:10656800-10687200	Weak transcription	Small Intestine	intestine
23	chr1:10657400-10663200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr1:10657600-10661400	Weak transcription	Fetal Kidney	kidney
25	chr1:10657600-10665800	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr1:10657600-10675400	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr1:10657600-10683200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr1:10657800-10661600	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr1:10657800-10666000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr1:10657800-10683600	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr1:10657800-10684200	Weak transcription	Colonic Mucosa	Colon
32	chr1:10658000-10674600	Weak transcription	Brain Cingulate Gyrus	brain
33	chr1:10658200-10694400	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr1:10658400-10664200	Weak transcription	Spleen	Spleen
35	chr1:10658400-10670600	Weak transcription	Left Ventricle	heart
36	chr1:10658400-10670800	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr1:10658400-10672800	Weak transcription	Gastric	stomach
38	chr1:10658400-10674600	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr1:10658400-10674800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr1:10658400-10675600	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr1:10658400-10678200	Weak transcription	Ovary	ovary
42	chr1:10658400-10688600	Weak transcription	Fetal Lung	lung
43	chr1:10658400-10691600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr1:10658600-10661400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr1:10658600-10674000	Weak transcription	Brain Hippocampus Middle	brain
46	chr1:10658600-10675600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr1:10658600-10678000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr1:10658800-10665600	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr1:10658800-10678400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr1:10659000-10661800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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