Variant report

Variant	rs59912226
Chromosome Location	chr10:44321649-44321650
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11238740	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11238751	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11238762	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12218376	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12220508	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12220920	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2125978	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2985833	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049266	chr10:44296893-44323365	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44314600-44323800	Weak transcription	Thymus	Thymus
2	chr10:44314800-44323200	Weak transcription	Gastric	stomach
3	chr10:44315200-44321800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:44320000-44322400	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr10:44320400-44321800	Enhancers	Spleen	Spleen
6	chr10:44320400-44322200	Enhancers	Ovary	ovary
7	chr10:44320800-44322200	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr10:44321400-44323000	Weak transcription	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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