Variant report

Variant	rs59916937
Chromosome Location	chr9:94658598-94658599
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:94657831..94659746-chr9:94710124..94712631,2	K562	blood:
2	chr9:94654512..94657434-chr9:94657669..94659838,4	K562	blood:
3	chr9:94643211..94646019-chr9:94657149..94659875,2	K562	blood:
4	chr9:94656937..94658928-chr9:94660784..94663442,2	MCF-7	breast:
5	chr9:94658208..94667163-chr9:94705322..94714120,17	K562	blood:

Variant related genes	Relation type
ENSG00000169071	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7875037	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv530946	chr9:94633154-94715023	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94648800-94661000	Weak transcription	Spleen	Spleen
2	chr9:94649400-94663200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr9:94650000-94662400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr9:94651200-94659200	Enhancers	Colon Smooth Muscle	Colon
5	chr9:94651200-94665000	Weak transcription	NHLF	lung
6	chr9:94651600-94660800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr9:94651800-94659200	Enhancers	Stomach Smooth Muscle	stomach
8	chr9:94652000-94659200	Weak transcription	Colonic Mucosa	Colon
9	chr9:94652000-94661000	Weak transcription	Lung	lung
10	chr9:94654000-94661200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:94655600-94659200	Weak transcription	Fetal Thymus	thymus
12	chr9:94655600-94661000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr9:94656400-94659000	Enhancers	K562	blood
14	chr9:94656400-94661400	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr9:94656600-94660200	Weak transcription	Placenta	Placenta
16	chr9:94656600-94660800	Weak transcription	Right Ventricle	heart
17	chr9:94657200-94659200	Weak transcription	Right Atrium	heart
18	chr9:94657400-94658800	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr9:94657400-94660800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr9:94657400-94660800	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr9:94657600-94658800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr9:94657600-94658800	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr9:94657600-94661000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr9:94658000-94660400	Enhancers	Stomach Mucosa	stomach
25	chr9:94658000-94663600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr9:94658000-94667400	Enhancers	Fetal Lung	lung
27	chr9:94658200-94659000	Enhancers	Rectal Smooth Muscle	rectum
28	chr9:94658200-94659400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr9:94658200-94659600	Enhancers	Primary hematopoietic stem cells	blood
30	chr9:94658200-94660400	Enhancers	Fetal Stomach	stomach
31	chr9:94658200-94661200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr9:94658200-94661400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr9:94658200-94662000	Enhancers	Fetal Heart	heart
34	chr9:94658200-94666200	Enhancers	Fetal Kidney	kidney
35	chr9:94658400-94658600	Enhancers	Ovary	ovary
36	chr9:94658400-94658600	Enhancers	Pancreas	Pancrea
37	chr9:94658400-94659000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr9:94658400-94659000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr9:94658400-94659000	Enhancers	Brain Hippocampus Middle	brain
40	chr9:94658400-94659200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr9:94658400-94659600	Enhancers	Esophagus	oesophagus
42	chr9:94658400-94660200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr9:94658400-94660400	Enhancers	Breast Myoepithelial Primary Cells	Breast
44	chr9:94658400-94660800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr9:94658400-94661600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr9:94658400-94664400	Enhancers	Fetal Intestine Large	intestine
47	chr9:94658400-94664600	Enhancers	Fetal Intestine Small	intestine
48	chr9:94658400-94665800	Enhancers	Duodenum Smooth Muscle	Duodenum

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