Variant report

Variant	rs59918794
Chromosome Location	chr11:35016842-35016843
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:35015301..35017003-chr11:35017978..35019593,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12099088	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12099276	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12099355	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55861208	1.00[AMR][1000 genomes]
rs57376219	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57866077	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58454793	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59187495	1.00[AMR][1000 genomes]
rs60153552	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61299387	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv430371	chr11:34975067-35111292	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	esv1826391	chr11:35000983-35098193	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv897215	chr11:35009233-35048359	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34959000-35019600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr11:34976600-35018400	Weak transcription	Spleen	Spleen
3	chr11:34983600-35018200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr11:34985200-35026600	Weak transcription	Colonic Mucosa	Colon
5	chr11:34987000-35017000	Weak transcription	K562	blood
6	chr11:34991000-35020800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:34997600-35019600	Weak transcription	Fetal Kidney	kidney
8	chr11:34999000-35018600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr11:35000600-35035000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr11:35000800-35018200	Weak transcription	Brain Substantia Nigra	brain
11	chr11:35000800-35019600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr11:35000800-35019800	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr11:35000800-35031000	Weak transcription	Stomach Smooth Muscle	stomach
14	chr11:35001000-35019600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr11:35001000-35019600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr11:35001000-35019600	Weak transcription	HMEC	breast
17	chr11:35001000-35021200	Weak transcription	Lung	lung
18	chr11:35001200-35019600	Weak transcription	NHEK	skin
19	chr11:35006800-35019600	Weak transcription	HUVEC	blood vessel
20	chr11:35007000-35018600	Weak transcription	Thymus	Thymus
21	chr11:35007000-35019600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr11:35007000-35020600	Weak transcription	Placenta	Placenta
23	chr11:35007000-35026600	Weak transcription	Fetal Intestine Small	intestine
24	chr11:35007000-35028000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr11:35007000-35029800	Weak transcription	Esophagus	oesophagus
26	chr11:35007200-35017600	Weak transcription	Brain Anterior Caudate	brain
27	chr11:35007200-35018200	Weak transcription	Brain Angular Gyrus	brain
28	chr11:35007200-35035200	Weak transcription	Fetal Stomach	stomach
29	chr11:35007400-35017400	Weak transcription	Brain Cingulate Gyrus	brain
30	chr11:35007400-35019600	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr11:35007400-35019600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr11:35007400-35026600	Weak transcription	Fetal Intestine Large	intestine
33	chr11:35007400-35026800	Weak transcription	Fetal Brain Female	brain
34	chr11:35007400-35027800	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr11:35007600-35019600	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr11:35007600-35019600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr11:35007600-35020200	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr11:35007800-35019600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr11:35008400-35018600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr11:35008600-35018000	Weak transcription	Right Ventricle	heart
41	chr11:35008600-35019600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr11:35008600-35019600	Weak transcription	Brain Hippocampus Middle	brain
43	chr11:35008600-35019600	Weak transcription	NHDF-Ad	bronchial
44	chr11:35008600-35025200	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr11:35008600-35026600	Weak transcription	Fetal Muscle Leg	muscle
46	chr11:35008600-35026600	Weak transcription	Pancreas	Pancrea
47	chr11:35008600-35030800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr11:35008800-35018400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr11:35009000-35019600	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr11:35009000-35019600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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