Variant report

Variant	rs59929025
Chromosome Location	chr17:17843826-17843827
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:17842655..17844520-chr17:17849139..17852302,3	MCF-7	breast:
2	chr17:17841663..17844625-chr17:17845017..17847757,2	MCF-7	breast:
3	chr17:17830467..17833990-chr17:17840176..17843911,4	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs57006959	0.84[ASN][1000 genomes]
rs57195963	0.84[ASN][1000 genomes]
rs58018883	0.85[AFR][1000 genomes]
rs58628558	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs59899858	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61225351	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531183	chr17:17571035-18205309	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
2	nsv916653	chr17:17651916-18454952	Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
3	nsv907766	chr17:17682484-17957348	Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
4	nsv533142	chr17:17691726-18236686	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
5	nsv482879	chr17:17802463-17989273	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17828200-17861000	Weak transcription	Primary B cells from cord blood	blood
2	chr17:17828600-17858000	Weak transcription	Primary B cells from peripheral blood	blood
3	chr17:17836400-17853000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr17:17836600-17846600	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr17:17836800-17846000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr17:17837000-17845400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr17:17837400-17847800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr17:17837800-17844000	Enhancers	Fetal Heart	heart
9	chr17:17837800-17847600	Enhancers	HMEC	breast
10	chr17:17838000-17844400	Enhancers	Fetal Intestine Large	intestine
11	chr17:17838000-17845000	Enhancers	Right Ventricle	heart
12	chr17:17838000-17848600	Enhancers	Duodenum Smooth Muscle	Duodenum
13	chr17:17838200-17844600	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr17:17838200-17845600	Enhancers	Right Atrium	heart
15	chr17:17838400-17844800	Enhancers	Small Intestine	intestine
16	chr17:17838600-17845400	Enhancers	Esophagus	oesophagus
17	chr17:17838600-17846600	Enhancers	Duodenum Mucosa	Duodenum
18	chr17:17838800-17846000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr17:17838800-17846000	Enhancers	Psoas Muscle	Psoas
20	chr17:17839400-17844800	Weak transcription	Primary T cells from cord blood	blood
21	chr17:17839400-17858800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr17:17839400-17860200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr17:17839600-17846600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr17:17839600-17846600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr17:17839800-17844600	Weak transcription	Liver	Liver
26	chr17:17839800-17846600	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr17:17839800-17859800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr17:17840200-17844600	Enhancers	Gastric	stomach
29	chr17:17840400-17845000	Enhancers	Stomach Mucosa	stomach
30	chr17:17840800-17846000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr17:17840800-17846600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr17:17840800-17846800	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr17:17841000-17844400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr17:17841000-17846000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr17:17841000-17846400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr17:17841000-17846800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr17:17841000-17847400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr17:17841200-17844000	Weak transcription	Fetal Brain Male	brain
39	chr17:17841400-17846000	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr17:17841400-17846600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr17:17841600-17844400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr17:17841600-17844400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr17:17841600-17846600	Weak transcription	Pancreas	Pancrea
44	chr17:17841800-17846000	Enhancers	HSMMtube	muscle
45	chr17:17842000-17846000	Enhancers	NHEK	skin
46	chr17:17842200-17846600	Enhancers	Hela-S3	cervix
47	chr17:17842400-17846600	Weak transcription	Primary T helper cells PMA-I stimulated	--
48	chr17:17842800-17844000	Weak transcription	HepG2	liver
49	chr17:17842800-17846000	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr17:17842800-17846800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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