Variant report

Variant	rs59931164
Chromosome Location	chr11:72464235-72464236
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:12)
CpG islands
(count:61)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:12 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr11:72462568-72464309	SK-N-SH	brain:	n/a	chr11:72463497-72463506
2	MAZ	chr11:72462698-72464819	IMR90	lung:	n/a	chr11:72463550-72463560 chr11:72463495-72463506 chr11:72463496-72463505 chr11:72463494-72463503
3	POLR2A	chr11:72463316-72465204	K562	blood:	n/a	n/a
4	RAD21	chr11:72464222-72464918	HepG2	liver:	n/a	chr11:72464682-72464701 chr11:72464696-72464705 chr11:72464685-72464698
5	POLR2A	chr11:72462502-72465175	HepG2	liver:	n/a	n/a
6	POLR2A	chr11:72462630-72464391	K562	blood:	n/a	n/a
7	POLR2A	chr11:72463200-72465309	HepG2	liver:	n/a	n/a
8	FOSL2	chr11:72464170-72465021	HepG2	liver:	n/a	n/a
9	POLR2A	chr11:72463395-72465096	HepG2	liver:	n/a	n/a
10	SIN3AK20	chr11:72462043-72464358	MCF-7	breast:	n/a	n/a
11	POLR2A	chr11:72462970-72465402	MCF-7	breast:	n/a	n/a
12	POLR2A	chr11:72462232-72464761	IMR90	lung:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:72464203-72464253	AG09319	gingival:	n/a
2	chr11:72464203-72464253	GM12878	blood:	n/a
3	chr11:72464203-72464253	HCF	heart:	n/a
4	chr11:72464203-72464253	Hepatocyte	liver:	n/a
5	chr11:72464203-72464253	HAEpiC	amniotic membrane:	n/a
6	chr11:72464203-72464253	SK-N-SH_RA	brain:	n/a
7	chr11:72464203-72464253	MCF-7	breast:	n/a
8	chr11:72464203-72464253	HNPCEpiC	eye:	n/a
9	chr11:72464203-72464253	HMEC	breast:	n/a
10	chr11:72464203-72464253	ovcar-3	ovarian:	n/a
11	chr11:72464203-72464253	HPAEpiC	pulmonary alveolar:	n/a
12	chr11:72464203-72464253	HIPEpiC	eye:	n/a
13	chr11:72464203-72464253	NHDF-neo	bronchial:	n/a
14	chr11:72464203-72464253	BJ	skin:	n/a
15	chr11:72464203-72464253	GM06990	blood:	n/a
16	chr11:72464203-72464253	T-47D	breast:	n/a
17	chr11:72464203-72464253	HRE	kidney:	n/a
18	chr11:72464203-72464253	HepG2	liver:	n/a
19	chr11:72464203-72464253	HUVEC	blood vessel:	n/a
20	chr11:72464203-72464253	HCT-116	colon:	n/a
21	chr11:72464203-72464253	RPTEC	kidney:	n/a
22	chr11:72464203-72464253	HRCEpiC	kidney:	n/a
23	chr11:72464203-72464253	CMK	blood:	n/a
24	chr11:72464203-72464253	BE2_C	brain:	n/a
25	chr11:72464203-72464253	IMR90	lung:	fetal
26	chr11:72464203-72464253	H1-hESC	embryonic stem cell:	embryo
27	chr11:72464203-72464253	Jurkat	blood:	n/a
28	chr11:72464203-72464253	GM12891	blood:	n/a
29	chr11:72464203-72464253	NT2-D1	testis:	n/a
30	chr11:72464203-72464253	GM19239	blood:	n/a
31	chr11:72464203-72464253	AG09309	skin:	n/a
32	chr11:72464203-72464253	SK-N-SH	brain:	n/a
33	chr11:72464203-72464253	U87	brain:	n/a
34	chr11:72464203-72464253	HCPEpiC	choroid plexus:	n/a
35	chr11:72464203-72464253	A549	lung:	n/a
36	chr11:72464203-72464253	AG04449	skin:	fetal
37	chr11:72464203-72464253	NHBE	bronchial:	n/a
38	chr11:72464203-72464253	K562	blood:	n/a
39	chr11:72464203-72464253	Caco-2	colon:	n/a
40	chr11:72464203-72464253	HCM	heart:	n/a
41	chr11:72464203-72464253	LNCaP	prostate:	n/a
42	chr11:72464203-72464253	HRPEpiC	eye:	n/a
43	chr11:72464203-72464253	PFSK-1	brain:	n/a
44	chr11:72464203-72464253	SAEC	small airway:	n/a
45	chr11:72464203-72464253	NH-A	brain:	n/a
46	chr11:72464203-72464253	GM12892	blood:	n/a
47	chr11:72464203-72464253	MCF10A-Er-Src	breast:	n/a
48	chr11:72464203-72464253	AoSMC	blood vessel:	n/a
49	chr11:72464203-72464253	NB4	blood:	n/a
50	chr11:72464203-72464253	HEK293	kidney:	embryo

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:72433558..72435916-chr11:72463458..72465662,2	MCF-7	breast:
2	chr11:72461993..72465359-chr11:72491963..72493713,4	MCF-7	breast:
3	chr11:62606737..62609298-chr11:72462378..72465118,2	MCF-7	breast:
4	chr11:72463586..72465161-chr11:72998103..73000277,2	MCF-7	breast:
5	chr11:72463590..72465802-chr11:72527562..72530193,2	K562	blood:
6	chr11:72463870..72465376-chr11:72476007..72478124,2	K562	blood:
7	chr11:72463782..72465022-chr11:72504119..72505332,5	MCF-7	breast:
8	chr11:72463855..72465711-chr11:72503700..72505244,2	K562	blood:
9	chr11:72461925..72464925-chr11:72465521..72468499,4	MCF-7	breast:
10	chr11:72459780..72464369-chr11:72496820..72501695,6	MCF-7	breast:
11	chr11:72460411..72465058-chr11:72522153..72526935,8	MCF-7	breast:
12	chr11:72462706..72465111-chr11:72501934..72505822,4	MCF-7	breast:
13	chr11:72461703..72464740-chr11:72523811..72527033,4	K562	blood:
14	chr11:72463173..72465384-chr11:72852614..72854761,2	MCF-7	breast:

No data

Variant related genes	Relation type
ARAP1	TF binding region
ARAP1	CpG island
ENSG00000168010	Chromatin interaction
ENSG00000133316	Chromatin interaction
ENSG00000214530	Chromatin interaction
ENSG00000137478	Chromatin interaction
ENSG00000186635	Chromatin interaction
ENSG00000202522	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs57712040	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1806140	chr11:72268466-72546175	Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	77 gene(s)	inside rSNPs	diseases
2	nsv832207	chr11:72272750-72469122	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases
3	esv3394774	chr11:72320884-72694077	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72461600-72464400	Flanking Active TSS	Primary B cells from cord blood	blood
2	chr11:72461600-72464400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr11:72462000-72465000	Enhancers	Stomach Mucosa	stomach
4	chr11:72463600-72464400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
5	chr11:72463600-72464400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
6	chr11:72463800-72464400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr11:72463800-72464400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr11:72463800-72464400	Flanking Active TSS	Primary hematopoietic stem cells	blood
9	chr11:72463800-72464400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr11:72463800-72464400	Flanking Active TSS	Colon Smooth Muscle	Colon
11	chr11:72463800-72464400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
12	chr11:72463800-72464400	Flanking Active TSS	K562	blood
13	chr11:72463800-72464600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:72463800-72464600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
15	chr11:72463800-72464600	Enhancers	Sigmoid Colon	Sigmoid Colon
16	chr11:72463800-72464800	Weak transcription	Fetal Brain Female	brain
17	chr11:72463800-72465000	Enhancers	Spleen	Spleen
18	chr11:72464000-72464400	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr11:72464000-72464400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr11:72464000-72464400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
21	chr11:72464000-72464400	Enhancers	HUVEC	blood vessel
22	chr11:72464000-72464600	Enhancers	Primary B cells from peripheral blood	blood
23	chr11:72464000-72464600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr11:72464000-72464600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr11:72464000-72464600	Enhancers	Brain Substantia Nigra	brain
26	chr11:72464000-72464600	Enhancers	Fetal Intestine Large	intestine
27	chr11:72464000-72464600	Enhancers	Ovary	ovary
28	chr11:72464000-72464800	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr11:72464000-72464800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
30	chr11:72464000-72464800	Enhancers	Placenta	Placenta
31	chr11:72464000-72465000	Enhancers	H1 Cell Line	embryonic stem cell
32	chr11:72464000-72465000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr11:72464000-72465000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
34	chr11:72464000-72465000	Enhancers	Fetal Heart	heart
35	chr11:72464000-72465200	Enhancers	Right Ventricle	heart
36	chr11:72464000-72465400	Enhancers	Gastric	stomach
37	chr11:72464000-72465600	Enhancers	Fetal Muscle Leg	muscle
38	chr11:72464000-72465600	Enhancers	Pancreas	Pancrea
39	chr11:72464000-72466400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
40	chr11:72464000-72466800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
41	chr11:72464000-72469800	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr11:72464000-72469800	Weak transcription	Right Atrium	heart
43	chr11:72464200-72464400	Active TSS	HUES48 Cell Line	embryonic stem cell
44	chr11:72464200-72464400	Enhancers	HUES64 Cell Line	embryonic stem cell
45	chr11:72464200-72464400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr11:72464200-72464400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
47	chr11:72464200-72464400	Enhancers	iPS-18 Cell Line	embryonic stem cell
48	chr11:72464200-72464400	Enhancers	iPS-20b Cell Line	embryonic stem cell
49	chr11:72464200-72464400	Enhancers	Primary T cells from cord blood	blood
50	chr11:72464200-72464400	Enhancers	Primary T helper naive cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links