Variant report

Variant	rs59932492
Chromosome Location	chr2:11525362-11525363
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:11511588..11513263-chr2:11524168..11525755,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs55692822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58087774	1.00[AMR][1000 genomes]
rs73915168	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010506	chr2:11430965-12057286	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv535585	chr2:11430965-12057286	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11515400-11526000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr2:11516000-11526000	Weak transcription	Aorta	Aorta
3	chr2:11516200-11528400	Weak transcription	Pancreas	Pancrea
4	chr2:11517600-11536400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr2:11518600-11525800	Weak transcription	HSMM	muscle
6	chr2:11519000-11537400	Weak transcription	Brain Hippocampus Middle	brain
7	chr2:11519200-11530800	Weak transcription	Brain Anterior Caudate	brain
8	chr2:11519600-11525800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr2:11520000-11526000	Weak transcription	Lung	lung
10	chr2:11520000-11526200	Weak transcription	Right Atrium	heart
11	chr2:11520000-11529400	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr2:11520200-11526000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr2:11520200-11526200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr2:11520200-11526200	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr2:11520200-11527800	Weak transcription	Small Intestine	intestine
16	chr2:11520200-11531600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr2:11520400-11525400	Weak transcription	Liver	Liver
18	chr2:11520400-11525600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr2:11520400-11525800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr2:11520400-11525800	Weak transcription	Fetal Heart	heart
21	chr2:11520400-11525800	Weak transcription	Osteobl	bone
22	chr2:11521600-11528400	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr2:11521600-11528400	Weak transcription	Fetal Lung	lung
24	chr2:11522400-11526000	Weak transcription	HUVEC	blood vessel
25	chr2:11522800-11525400	Weak transcription	Hela-S3	cervix
26	chr2:11522800-11525800	Weak transcription	NHDF-Ad	bronchial
27	chr2:11523800-11530800	Enhancers	Fetal Intestine Large	intestine
28	chr2:11524000-11530400	Enhancers	Fetal Intestine Small	intestine
29	chr2:11524200-11525400	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr2:11525200-11526200	Enhancers	A549	lung
31	chr2:11525200-11527200	Enhancers	Sigmoid Colon	Sigmoid Colon
32	chr2:11525200-11528000	Enhancers	HepG2	liver
33	chr2:11525200-11528400	Enhancers	Duodenum Mucosa	Duodenum
34	chr2:11525200-11528400	Enhancers	Rectal Mucosa Donor 31	rectum

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