Variant report

Variant	rs59932525
Chromosome Location	chr3:94756719-94756720
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1822385	0.81[AFR][1000 genomes]
rs55873906	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73847083	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73847087	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73848738	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73848739	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7647775	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877169	chr3:94675697-94840854	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:94755200-94757000	Enhancers	Placenta Amnion	Placenta Amnion
2	chr3:94755400-94757000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:94755600-94757000	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr3:94755600-94757000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:94755600-94757400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr3:94755800-94757200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr3:94756000-94758800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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