Variant report

Variant	rs59932755
Chromosome Location	chr11:66670392-66670393
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:66659430..66661000-chr11:66669992..66672948,2	MCF-7	breast:
2	chr11:66660192..66664541-chr11:66668584..66671448,3	K562	blood:
3	chr11:66652395..66655617-chr11:66668834..66672055,3	K562	blood:
4	chr11:66660473..66662701-chr11:66668777..66670882,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11828542	1.00[ASN][1000 genomes]
rs17147932	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2380758	1.00[ASN][1000 genomes]
rs3802743	1.00[ASN][1000 genomes]
rs4397861	1.00[ASN][1000 genomes]
rs4500496	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56803995	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57240313	1.00[ASN][1000 genomes]
rs57410747	1.00[ASN][1000 genomes]
rs57466874	1.00[ASN][1000 genomes]
rs58800112	1.00[ASN][1000 genomes]
rs59538303	1.00[ASN][1000 genomes]
rs59550560	1.00[ASN][1000 genomes]
rs60651024	1.00[ASN][1000 genomes]
rs61634527	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7952232	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897794	chr11:66579572-66744119	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv555226	chr11:66579572-66845362	Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
3	nsv428574	chr11:66619002-66804133	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv832194	chr11:66634462-66805980	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
5	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66651200-66673200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:66651400-66678400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr11:66654600-66673800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr11:66660000-66672200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr11:66660200-66673600	Weak transcription	HSMMtube	muscle
6	chr11:66660600-66673600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr11:66660800-66671600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr11:66660800-66671600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr11:66660800-66672600	Weak transcription	Psoas Muscle	Psoas
10	chr11:66661800-66670600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr11:66662200-66673600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:66662800-66671600	Weak transcription	Esophagus	oesophagus
13	chr11:66663000-66672200	Weak transcription	Brain Hippocampus Middle	brain
14	chr11:66664200-66673800	Weak transcription	Right Ventricle	heart
15	chr11:66665800-66671400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr11:66665800-66673400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr11:66666400-66673400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr11:66667200-66673600	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr11:66668400-66670800	Strong transcription	NHEK	skin
20	chr11:66669000-66672200	Weak transcription	Brain Anterior Caudate	brain
21	chr11:66669200-66670600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr11:66669400-66670600	Enhancers	Ovary	ovary
23	chr11:66669400-66670800	Flanking Active TSS	HepG2	liver
24	chr11:66669600-66670400	Enhancers	Adipose Nuclei	Adipose
25	chr11:66669600-66670400	Enhancers	Brain Angular Gyrus	brain
26	chr11:66669600-66670400	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr11:66669600-66670400	Enhancers	Brain Substantia Nigra	brain
28	chr11:66669600-66670400	Enhancers	Pancreas	Pancrea
29	chr11:66669800-66670400	Flanking Active TSS	Liver	Liver
30	chr11:66669800-66670400	Enhancers	Colonic Mucosa	Colon
31	chr11:66669800-66670800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr11:66669800-66670800	Genic enhancers	Hela-S3	cervix
33	chr11:66669800-66671400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr11:66669800-66672600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr11:66670000-66670400	Enhancers	Spleen	Spleen
36	chr11:66670000-66670600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr11:66670000-66670600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr11:66670000-66670600	Genic enhancers	Gastric	stomach
39	chr11:66670000-66670600	Enhancers	Sigmoid Colon	Sigmoid Colon
40	chr11:66670000-66670800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr11:66670000-66670800	Enhancers	iPS-20b Cell Line	embryonic stem cell
42	chr11:66670000-66670800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr11:66670000-66670800	Genic enhancers	HMEC	breast
44	chr11:66670000-66674000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr11:66670000-66675200	Weak transcription	Fetal Intestine Large	intestine
46	chr11:66670200-66670400	Enhancers	HUES48 Cell Line	embryonic stem cell
47	chr11:66670200-66670400	Flanking Active TSS	A549	lung
48	chr11:66670200-66670600	Enhancers	H1 Cell Line	embryonic stem cell
49	chr11:66670200-66670600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr11:66670200-66670600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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