Variant report

Variant	rs59935751
Chromosome Location	chr5:112557627-112557628
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs13355627	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17135465	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17376277	0.92[ASN][1000 genomes]
rs34893422	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58404821	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs59073951	0.82[ASN][1000 genomes]
rs59823901	0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73244753	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv882718	chr5:112519471-112674376	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112548400-112581800	Weak transcription	Fetal Kidney	kidney
2	chr5:112549600-112559600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr5:112550200-112559600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr5:112550600-112558400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr5:112551600-112559800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr5:112553000-112560200	Weak transcription	Brain Substantia Nigra	brain
7	chr5:112553600-112560600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr5:112553800-112558600	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr5:112554200-112558400	Weak transcription	Psoas Muscle	Psoas
10	chr5:112554200-112559000	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr5:112554200-112559600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr5:112554200-112561600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr5:112554200-112564200	Weak transcription	Small Intestine	intestine
14	chr5:112554400-112558600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr5:112555000-112558400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr5:112555000-112558400	Weak transcription	Right Atrium	heart
17	chr5:112555000-112566800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr5:112555200-112559400	Weak transcription	Fetal Lung	lung
19	chr5:112555200-112559600	Weak transcription	Fetal Muscle Leg	muscle
20	chr5:112555600-112559600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr5:112555600-112560200	Weak transcription	Liver	Liver
22	chr5:112555600-112560200	Weak transcription	Fetal Stomach	stomach
23	chr5:112556400-112557800	Enhancers	HUVEC	blood vessel
24	chr5:112556600-112557800	Enhancers	Left Ventricle	heart
25	chr5:112556600-112559000	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr5:112556600-112561800	Enhancers	Ovary	ovary
27	chr5:112556800-112557800	Enhancers	H1 Cell Line	embryonic stem cell
28	chr5:112556800-112557800	Enhancers	NHEK	skin
29	chr5:112556800-112559800	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr5:112557000-112557800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr5:112557000-112557800	Enhancers	Muscle Satellite Cultured Cells	--
32	chr5:112557000-112557800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr5:112557000-112557800	Enhancers	HMEC	breast
34	chr5:112557200-112557800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
35	chr5:112557200-112557800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr5:112557200-112557800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr5:112557200-112558000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
38	chr5:112557200-112558400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr5:112557200-112558400	Weak transcription	Right Ventricle	heart
40	chr5:112557200-112585800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr5:112557400-112558400	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr5:112557400-112558600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr5:112557400-112558600	Weak transcription	Fetal Heart	heart
44	chr5:112557400-112558800	Weak transcription	Adipose Nuclei	Adipose
45	chr5:112557400-112559400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr5:112557400-112559400	Weak transcription	NH-A	brain
47	chr5:112557400-112560200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr5:112557400-112560400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr5:112557400-112561800	Weak transcription	NHDF-Ad	bronchial
50	chr5:112557400-112564800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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