Variant report

Variant	rs59937996
Chromosome Location	chr3:69263354-69263355
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:69261818..69263974-chr3:69274999..69277615,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs4513455	0.83[ASN][1000 genomes]
rs59324628	0.83[ASN][1000 genomes]
rs6777899	0.83[ASN][1000 genomes]
rs72930257	0.83[ASN][1000 genomes]
rs72932116	0.83[ASN][1000 genomes]
rs9820998	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3398378	chr3:69240573-69271936	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69232000-69275600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:69242400-69281600	Weak transcription	Brain Germinal Matrix	brain
3	chr3:69242600-69268800	Weak transcription	Spleen	Spleen
4	chr3:69244000-69264800	Weak transcription	Fetal Brain Female	brain
5	chr3:69246200-69266800	Weak transcription	HSMM	muscle
6	chr3:69250000-69269200	Weak transcription	Thymus	Thymus
7	chr3:69250000-69272400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr3:69250000-69281600	Weak transcription	Esophagus	oesophagus
9	chr3:69250200-69268800	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr3:69250200-69268800	Weak transcription	Ovary	ovary
11	chr3:69250200-69286000	Weak transcription	Colonic Mucosa	Colon
12	chr3:69250400-69264800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr3:69250400-69268400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr3:69250400-69280000	Weak transcription	Fetal Kidney	kidney
15	chr3:69253000-69266400	Weak transcription	Small Intestine	intestine
16	chr3:69253000-69297600	Weak transcription	Gastric	stomach
17	chr3:69253400-69277400	Weak transcription	Left Ventricle	heart
18	chr3:69253600-69263400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr3:69253600-69266600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr3:69253600-69267600	Weak transcription	Placenta	Placenta
21	chr3:69254000-69280800	Weak transcription	Pancreas	Pancrea
22	chr3:69254000-69286000	Weak transcription	Right Ventricle	heart
23	chr3:69254200-69263600	Weak transcription	HSMMtube	muscle
24	chr3:69254600-69299000	Weak transcription	Fetal Brain Male	brain
25	chr3:69256600-69269200	Weak transcription	Adipose Nuclei	Adipose
26	chr3:69258600-69263400	Weak transcription	Aorta	Aorta
27	chr3:69259400-69266600	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr3:69260000-69285800	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr3:69260400-69263400	Enhancers	Stomach Mucosa	stomach
30	chr3:69260400-69263800	Enhancers	Hela-S3	cervix
31	chr3:69260800-69264000	Genic enhancers	Brain Hippocampus Middle	brain
32	chr3:69261000-69263400	Weak transcription	Brain Anterior Caudate	brain
33	chr3:69261000-69263400	Weak transcription	Fetal Heart	heart
34	chr3:69261000-69269800	Weak transcription	Fetal Muscle Leg	muscle
35	chr3:69261000-69272800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr3:69261000-69280400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr3:69261800-69263800	Enhancers	Brain Angular Gyrus	brain
38	chr3:69262000-69263400	Weak transcription	Duodenum Mucosa	Duodenum
39	chr3:69262000-69263600	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr3:69262000-69265600	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr3:69262200-69263400	Weak transcription	Brain Substantia Nigra	brain
42	chr3:69262200-69266200	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr3:69262200-69274200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr3:69262400-69264000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr3:69262400-69264000	Enhancers	A549	lung
46	chr3:69262400-69264200	Strong transcription	Rectal Mucosa Donor 29	rectum
47	chr3:69262400-69264600	Weak transcription	Primary T helper cells PMA-I stimulated	--
48	chr3:69262400-69276000	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr3:69262600-69286200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr3:69262800-69263800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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